Transcripts
| TE_ID | TE_family | TE_superfamily | TE_class | Gene | Class | Coding | Tumor-specific score | TSS |
|---|---|---|---|---|---|---|---|---|
| TE_1 | AluSx1 | Alu | SINE | ENSG00000241860 | Chimeric | Non-coding | 0.11 | chr1(-):175362 |
| TE_2 | MIRb | L2-end | SINE | WASH9P | Chimeric | Non-coding | 1.86 | chr1(-):195771 |
| TE_3 | MIRc | L2-end | SINE | ENSG00000292994 | Annoated | Non-coding | 3.75 | chr1(-):289383 |
| TE_4 | MER4A1 | ERV1 | LTR | ENSG00000292994 | Chimeric | Non-coding | 0.86 | chr1(-):353172 |
| TE_5 | MER4D1 | ERV1 | LTR | ENSG00000292994 | Chimeric | Non-coding | 1.61 | chr1(-):358541 |
| TE_6 | AluSq2 | Alu | SINE | ENSG00000290385 | Chimeric | Non-coding | 0.39 | chr1(-):508260 |
| TE_7 | AluSg4 | Alu | SINE | ENSG00000290385 | Annoated | Non-coding | 0.61 | chr1(-):522991 |
| TE_8 | MER4D1 | ERV1 | LTR | ENSG00000293331 | Chimeric | Non-coding | 3.27 | chr1(-):587313 |
| TE_9 | AluJr | Alu | SINE | ENSG00000293331 | Annoated | Non-coding | 0.63 | chr1(-):612770 |
| TE_10 | MLT1D | MaLR | LTR | ENSG00000291215 | Chimeric | Non-coding | 0.98 | chr1(-):752533 |
| TE_11 | L1MB3_3end | L1 | LINE | ENSG00000290784 | Chimeric | Non-coding | 0.27 | chr1(-):812617 |
| TE_12 | L1M4b_5end | L1 | LINE | - | Intergenic | Non-coding | 0.29 | chr1(-):839676 |
| TE_13 | MER9a2 | ERV2 | LTR | FAM41C, - | Chimeric, Intergenic | Non-coding | 0.50 | chr1(-):898222 |
| TE_14 | MLT1G3 | MaLR | LTR | HES4 | Chimeric | Non-coding | 1.23 | chr1(-):1003580 |
| TE_15 | MLT1H2 | MaLR | LTR | HES4, - | Chimeric, Intergenic | Non-coding, Other | 1.49 | chr1(-):1005235 |
| TE_16 | L1MC1_3end | L1 | LINE | C1orf159 | Chimeric | Non-coding, Other | 1.18 | chr1(-):1100489 |
| TE_17 | L1MEb_5end | L1 | LINE | C1orf159 | Chimeric | Non-coding, Other | 0.86 | chr1(-):1103578 |
| TE_18 | AluJr | Alu | SINE | C1orf159 | Chimeric | Non-coding, Other | 0.79 | chr1(-):1103768 |
| TE_19 | FRAM | Alu | SINE | C1orf159 | Chimeric | Non-coding, Other | 0.92 | chr1(-):1104812 |
| TE_20 | LTR12C | ERV1 | LTR | C1orf159 | Annoated, Chimeric | Non-coding, Other | 0.77 | chr1(-):1106766 |
| TE_21 | MER50 | ERV1 | LTR | C1orf159 | Chimeric | Non-coding, Other | 0.33 | chr1(-):1112053 |
| TE_22 | MLT1B | MaLR | LTR | - | Intergenic | Non-coding, Other | 3.17 | chr1(-):1132948 |
| TE_23 | AluSx | Alu | SINE | UBE2J2 | Chimeric | Other | 0.76 | chr1(-):1264901 |
| TE_24 | AluSx | Alu | SINE | -, AURKAIP1 | Chimeric, Intergenic | Non-coding | 0.53 | chr1(-):1377467 |
| TE_25 | AluSx3 | Alu | SINE | MRPL20 | Chimeric | Non-coding, Other | 3.37 | chr1(-):1407804 |
| TE_26 | LTR7B | ERV1 | LTR | - | Intergenic | Non-coding | 27.05 | chr1(-):1469832 |
| TE_27 | LTR7B | ERV1 | LTR | - | Intergenic | Non-coding | 11.01 | chr1(-):1469911 |
| TE_28 | AluSx1 | Alu | SINE | CDK11A, ENSG00000268575 | Chimeric | Other | 0.55 | chr1(-):1716732 |
| TE_29 | L1M5_orf2 | L1 | LINE | NADK | Chimeric | Non-coding, Other | 1.54 | chr1(-):1771375 |
| TE_30 | MIR1_Amn | L2-end | SINE | NADK | Chimeric | Non-coding, Other | 1.01 | chr1(-):1782106 |
| TE_31 | AluSc | Alu | SINE | GNB1 | Chimeric | Non-coding, Truncated | 0.46 | chr1(-):1792530 |
| TE_32 | AluSx3, SVA_B | Alu, SVA | Retroposon, SINE | GNB1 | Chimeric | Non-coding, Annoated, Truncated, Chimeric_truncated, Other | 1.59 | chr1(-):1840437 |
| TE_33 | AluY | Alu | SINE | GNB1 | Chimeric | Annoated | 1.25 | chr1(-):1884924 |
| TE_34 | AluSq | Alu | SINE | GNB1 | Chimeric | Non-coding, Annoated, Truncated, Chimeric_truncated, Other | 0.60 | chr1(-):1888747 |
| TE_35 | LTR18B | ERV3 | LTR | CFAP74 | Chimeric | Non-coding, Other | 0.97 | chr1(-):1989169 |
| TE_36 | LTR18B | ERV3 | LTR | CFAP74 | Chimeric | Non-coding, Other | 0.31 | chr1(-):1989428 |
| TE_37 | AluJr | Alu | SINE | ENSG00000233542 | Chimeric | Non-coding, Other | 0.46 | chr1(-):2017267 |
| TE_38 | MLT1B | MaLR | LTR | - | Intergenic | Non-coding | 1.36 | chr1(-):2575428 |
| TE_39 | LTR40c | ERV3 | LTR | - | Intergenic | Non-coding | 3.38 | chr1(-):2583889 |
| TE_40 | L1MC5a_3end | L1 | LINE | TP73-AS3 | Annoated | Non-coding | 3.51 | chr1(-):3668779 |
| TE_41 | L2a_3end | L2 | LINE | GFOD3P | Annoated | Non-coding, Other | 0.82 | chr1(-):3745485 |
| TE_42 | AluJr | Alu | SINE | LRRC47 | Chimeric | Non-coding | 0.38 | chr1(-):3781872 |
| TE_43 | L1MC5_3end | L1 | LINE | CEP104 | Chimeric | Non-coding | 1.14 | chr1(-):3822078 |
| TE_44 | MLT1C2 | MaLR | LTR | ENSG00000284703 | Chimeric | Non-coding | 4.26 | chr1(-):4023833 |
| TE_45 | MER21C | ERV3 | LTR | - | Intergenic | Non-coding | 8.40 | chr1(-):4497602 |
| TE_46 | THE1D | MaLR | LTR | - | Intergenic | Non-coding, Other | 13.53 | chr1(-):4669472 |
| TE_47 | LTR16D2 | ERV3 | LTR | - | Intergenic | Non-coding, Other | 0.59 | chr1(-):5477081 |
| TE_48 | AluSc8 | Alu | SINE | ENSG00000284692 | Annoated | Non-coding | 0.36 | chr1(-):5492609 |
| TE_49 | MIR3 | L2-end | SINE | ENSG00000289893 | Chimeric | Non-coding | 3.18 | chr1(-):5773732 |
| TE_50 | L1MC5a_3end | L1 | LINE | NPHP4 | Chimeric | Non-coding, Other | 0.95 | chr1(-):5896813 |