TE_15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1H2 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Gene | HES4, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 1.49 |
| Counts of samples | TCGA_tumor:230; TCGA_normal:25; GTEx:149 |
| TSS | chr1(-):1005235 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):1003705,1003725,1004293,1004508,1005212,1005236 |
| teRNA_15.2 | HES4 | Chimeric | Other | MGMGDTITAVSEKRNLPPTQVSAPSWAAAQDPPPHSEQGNPKALRNPEAPTTNRGQIREAGRGPSEAKGTDPERQTHRWELSCGKEGGRNTVPGDPGVGSLAGGREQGGLFLSRRAEASAGGPSCLCSARTPAAAQGQEPWQMGVGAHYELDAVSGFKSRISWPGTVAHTCNPSTLGG* | chr1(-):999412,999432,999526,999613,999692,1004508,1005212,1005236 |
| teRNA_15.3 | HES4 | Chimeric | Other | MGMGDTITAVSEKRNLPPTQVSAPSWAAAQDPPPHSEQGNPKALRNPEAPTTNRGQIREAGRGPSEAKGTDPERQTHRWELSCGKEGGRNTVPGDPGVGSLAGGREQGGLFLSRRAEASAGGPSCLCSARTPAAAQGQEPWQMGVGAHYELDAVSGFKSRISWPGTVAHTCNPSTLGG* | chr1(-):999412,999432,999526,999613,999692,999787,999866,1004508,1005212,1005236 |
| teRNA_15.4 | HES4 | Chimeric | Other | MGMGDTITAVSEKRNLPPTQVSAPSWAAAQDPPPHSEQGNPKALRNPEAPTTNRGQIREAGRGPSEAKGTDPERQTHRWELSCGKEGGRNTVPGDPGVGSLAGGREQGGLFLSRRAEASAGGPSCLCSARTPAAAQGQEPWQMGVGAHYELDAVSGFKSRISWPGTVAHTCNPSTLGG* | chr1(-):999412,999432,999526,999613,999866,1004508,1005212,1005236 |
| teRNA_15.5 | - | Intergenic | Non-coding | Non-coding | chr1(-):1001270,1001290,1003537,1004508,1005212,1005236 |
| teRNA_15.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):1001270,1001290,1003537,1003725,1004293,1004508,1005212,1005236 |
| teRNA_15.7 | - | Intergenic | Non-coding | Non-coding | chr1(-):1001270,1001290,1004293,1004508,1005212,1005236 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
