TE_28
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSx1 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | CDK11A, ENSG00000268575 |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 0.55 |
| Counts of samples | TCGA_tumor:2027; TCGA_normal:131; GTEx:4053 |
| TSS | chr1(-):1716732 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_28.1 | CDK11A, ENSG00000268575 | Chimeric | Other | MAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKE | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704146,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707409,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709518,1709640,1712264,1712400,1716346,1716478,1716689,1716733 |
| teRNA_28.2 | CDK11A, ENSG00000268575 | Chimeric | Other | MAREHSRRERGNDGVCLFRDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVSPPPSGPSQGDPPRPTHSRPSVVAGG* | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707409,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709518,1709640,1712264,1712427,1716346,1716478,1716689,1716733 |
| teRNA_28.3 | CDK11A, ENSG00000268575 | Chimeric | Other | MKNEKMKTTSWLFQSHGSTEIPGRVKKQRKKWGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKE | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704146,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707525,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709479,1709640,1712264,1712400,1716346,1716478,1716689,1716733 |
| teRNA_28.4 | CDK11A, ENSG00000268575 | Chimeric | Other | MAREHSRRERGNDGVCLFRDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKE | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704146,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707409,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709518,1709640,1712264,1712427,1716346,1716478,1716689,1716733 |
| teRNA_28.5 | CDK11A, ENSG00000268575 | Chimeric | Other | MAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPGEARPAPAQKPAQLKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKE | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704146,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707409,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709479,1709640,1712264,1712400,1716346,1716478,1716689,1716733 |
| teRNA_28.6 | CDK11A, ENSG00000268575 | Chimeric | Other | MKNEKMKTTSWLFQSHGSTEIPGRVKKQRKKWGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKE | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703940,1704039,1704146,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707525,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709518,1709640,1712264,1712400,1716346,1716478,1716689,1716733 |
| teRNA_28.7 | CDK11A, ENSG00000268575 | Chimeric | Other | MAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGLPERRGVPVPEQDRGGHLWSGLQSKRQENR* | chr1(-):1702979,1702999,1703080,1703269,1703476,1703624,1703824,1703995,1704223,1704344,1704550,1704655,1704904,1705025,1705642,1705732,1707525,1707584,1708180,1708245,1708794,1708952,1709038,1709133,1709518,1709640,1712264,1712400,1716346,1716478,1716689,1716733 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
