TE_42
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJr |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | LRRC47 |
| Class | Chimeric |
| Coding | Non-coding |
| Tumor-specific score | 0.38 |
| Counts of samples | TCGA_tumor:79; TCGA_normal:4; GTEx:232 |
| TSS | chr1(-):3781872 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_42.1 | LRRC47 | Chimeric | Non-coding | Non-coding | chr1(-):3781316,3781336,3781512,3781601,3781720,3781873 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
