TE_13
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MER9a2 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Gene | FAM41C, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 0.50 |
| Counts of samples | TCGA_tumor:47; TCGA_normal:16; GTEx:91 |
| TSS | chr1(-):898222 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_13.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):878672,878692,879115,879212,898087,898223 |
| teRNA_13.2 | FAM41C | Chimeric | Non-coding | Non-coding | chr1(-):868655,868675,874112,875155,876746,877267,879115,879212,898087,898223 |
| teRNA_13.3 | FAM41C | Chimeric | Non-coding | Non-coding | chr1(-):868655,868675,875040,875155,876746,877267,879115,879212,898087,898223 |
| teRNA_13.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):878727,878747,879115,879212,898087,898223 |
| teRNA_13.5 | FAM41C | Chimeric | Non-coding | Non-coding | chr1(-):868655,868675,874112,875155,876746,877245,879115,879212,898087,898223 |
| teRNA_13.6 | FAM41C | Chimeric | Non-coding | Non-coding | chr1(-):868655,868675,875040,875155,876746,877245,879115,879212,898087,898223 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
