TE_31
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSc |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | GNB1 |
| Class | Chimeric |
| Coding | Non-coding, Truncated |
| Tumor-specific score | 0.46 |
| Counts of samples | TCGA_tumor:1622; TCGA_normal:131; GTEx:3866 |
| TSS | chr1(-):1792530 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_31.1 | GNB1 | Chimeric | Truncated | MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1792438,1792531 |
| teRNA_31.2 | GNB1 | Chimeric | Non-coding | Non-coding | chr1(-):1787417,1787437,1789053,1789269,1790395,1790596,1792438,1792531 |
| teRNA_31.3 | GNB1 | Chimeric | Non-coding | Non-coding | chr1(-):1789249,1789269,1790395,1790596,1792438,1792531 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
