LTR16D2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000424 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 572 |
| Kimura value | 29.63 |
| Tau index | 0.0000 |
| Description | LTR16D2 (Long Terminal Repeat) for ERVL endogenous retrovirus |
| Comment | - |
| Sequence |
TGTATTGGACACAAACCTTGTGCGCCTTCTCAGATTCCCTCGACCGCCTCCTTCTTTCTCTCTCTTGGCCGGCGCCCCACCCGCGCCGGGTCGCCCCTCCACTTTCGGACTTGGATGAAACGCCACACCGCGGGGCATGGGATCTGGCTTCCTGAGCGGCCGCCGAAGGGGCCGGATGACGCAACCCGGAAGTGCAGGGGAGTTAGCTCCCCGTGGGGTGAACCTTGACCAATGGGAAACGGGAGACGGGAGGGAGCCGGGCAGATAAATTCCCCCTCCTTTCTCTCTTCCGTGGACTACTCCGAGGTGCGGTTCCTCCTTGCAACCCTTCCGGAGAAGTCCCGCGTGCCGAGCGAACACGCCTGCTGAGCGACCTGCTGTGTCTCTTCGCGGCTCGTTGTGAAGCGGTAGCCAGCGCGGTAACGCATCGCATCGCATTGCTTCGCATCTTTCCTTGCCTCACTTCCCTTTTTCCTCACCCTCGCCGCCCTGGGCTTGCACCTCCCAAATAAAGTGTTAGCACCTTAATCCTTGCCTCAGGCTCTGCTTTCTAGAGGACCCGGGCTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR16D2 | ELF4 | 183 | 194 | + | 20.92 | AACCCGGAAGTG |
| LTR16D2 | ELF2 | 184 | 193 | + | 17.17 | ACCCGGAAGT |
| LTR16D2 | ZBTB11 | 186 | 194 | - | 16.94 | CACTTCCGG |
| LTR16D2 | Zic2 | 374 | 382 | - | 16.82 | CACAGCAGG |
| LTR16D2 | TFAP2C | 534 | 542 | - | 16.57 | GCCTGAGGC |
| LTR16D2 | TFAP2A | 534 | 542 | + | 16.42 | GCCTCAGGC |
| LTR16D2 | SPIB | 460 | 472 | + | 16.28 | TCACTTCCCTTTT |
| LTR16D2 | TFAP2B | 534 | 542 | + | 16.07 | GCCTCAGGC |
| LTR16D2 | ELK4 | 186 | 194 | - | 16.02 | CACTTCCGG |
| LTR16D2 | ZBTB7A | 186 | 194 | + | 15.99 | CCGGAAGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
