THE1D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000820 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Haplorrhini |
| Length | 381 |
| Kimura value | 10.85 |
| Tau index | 0.9642 |
| Description | THE1D Long Terminal Repeat for ERVL-MaLR endogenous retrovirus |
| Comment | THE1D is 80% similar to THE1A, 84% to THE1B, and 89% to THE1C. |
| Sequence |
TGATATGGTTTGGCTGTGTCCCCACCCAAANTCTCATCTCGAATTGTAATCCCCATAATCCCCACGTGTCGAGGGAGGGACCTGGTGGAGGTGATTGGATCATGGGGGCGGTTTCCCCCATGCTGTTCTCGTGATAGTGAGTGAGTTCTCACGAGATCTGATGGTTTTATAAGTGTCTGGCAGNTTTCCCCTGCNCTCACNCTTCTCTCTCCTGCCGCCNTGTGAAGAAGGTGCTTGCTTCCCCTTCGCCTTCCGCCATGATTGTAAGTTTCCTGAGGCCTCCCCAGCCATGCGGAACTGTGAGTCAATTAAACCTCTTTCCTTTATAAATTACCCAGTCTCGGGTAGTTCTTTATAGCAGTGTGAAAACGGACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| THE1D | KLF4 | 20 | 27 | + | 15.48 | CCCCACCC |
| THE1D | Dux | 92 | 102 | - | 15.02 | TGATCCAATCA |
| THE1D | BZR2 | 60 | 69 | - | 15.00 | ACACGTGGGG |
| THE1D | OJ1058_F05.8 | 62 | 69 | - | 14.66 | ACACGTGG |
| THE1D | Os05g0437700 | 62 | 69 | + | 14.66 | CCACGTGT |
| THE1D | KLF1 | 20 | 27 | - | 14.64 | GGGTGGGG |
| THE1D | BMY2 | 60 | 70 | - | 14.64 | GACACGTGGGG |
| THE1D | MZF1 | 48 | 55 | + | 14.60 | AATCCCCA |
| THE1D | MZF1 | 57 | 64 | + | 14.60 | AATCCCCA |
| THE1D | ZNF701 | 112 | 128 | - | 14.55 | GAACAGCATGGGGGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
