TE_47
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR16D2 |
|---|---|
| TE superfamily | ERV3 |
| TE order | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.59 |
| Counts of samples | TCGA_tumor:75; TCGA_normal:14; GTEx:131 |
| TSS | chr1(-):5477081 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_47.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):5470852,5470872,5471059,5471206,5476946,5477082 |
| teRNA_47.2 | - | Intergenic | Other | MLGPCIVHFPASLRADRPPEPQFPRCVCLVHFLRSPPSWRGNASALHLESMSCFFCLPHSPAALLRVILRRVLRPPPCLLGPSEQTWFPETEGAGSAMQSLSSQTMGLQGGGLLPTLFLGRSLMVSQSASSQFCLLRRKEGEKKEKGKEEEREGRKEMKEGRRKERKKEGEKGGGKGGEREGRTGRKEGKKEGGREGGKGGRREERGKEGGREGGREGNNSGRQIQSCLRTQL* | chr1(-):5449050,5449070,5450536,5450632,5453014,5470872,5471059,5471206,5476946,5477082 |
| teRNA_47.3 | - | Intergenic | Non-coding | Non-coding | chr1(-):5453206,5453226,5470686,5471206,5476946,5477082 |
| teRNA_47.4 | - | Intergenic | Non-coding | Non-coding | chr1(-):5453206,5453226,5471059,5471206,5476946,5477082 |
| teRNA_47.5 | - | Intergenic | Other | MLGPCIVHFPASLRADRPPEPQFPRCVCLVHFLRSPPSWRGNASALHLESMSCFFCLPHSPAALLRVILRRVLRPPPCLLGPSEQTWFPETEGAGSAMQSLSSQTMGLQGGGLLPTLFLGRSLMVSQSASSQFCLLRRKEGEKKEKGKEEEREGRKEMKEGRRKERKKEGEKGGGKGGEREGRTGRKEGKKEGGREGGKGGRREERGKEGGREGGREGNNSGRQIQSCLRTQL* | chr1(-):5449050,5449070,5450536,5450632,5453014,5471206,5476946,5477082 |
| teRNA_47.6 | - | Intergenic | Non-coding | Non-coding | chr1(-):5466641,5466661,5471059,5471206,5476946,5477082 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
