TE_49
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MIR3 |
|---|---|
| TE superfamily | L2-end |
| TE class | SINE |
| Gene | ENSG00000289893 |
| Class | Chimeric |
| Coding | Non-coding |
| Tumor-specific score | 3.18 |
| Counts of samples | TCGA_tumor:30; TCGA_normal:0; GTEx:10 |
| TSS | chr1(-):5773732 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_49.1 | ENSG00000289893 | Chimeric | Non-coding | Non-coding | chr1(-):5734533,5734553,5744376,5744491,5752238,5752315,5771360,5771524,5773653,5773733 |
| teRNA_49.2 | ENSG00000289893 | Chimeric | Non-coding | Non-coding | chr1(-):5734533,5734553,5744376,5744491,5752238,5752315,5771360,5771524,5771800,5771996,5773653,5773733 |
| teRNA_49.3 | ENSG00000289893 | Chimeric | Non-coding | Non-coding | chr1(-):5734533,5734553,5744376,5744491,5752238,5752315,5771360,5771521,5771800,5771996,5773653,5773733 |
| teRNA_49.4 | ENSG00000289893 | Chimeric | Non-coding | Non-coding | chr1(-):5734533,5734553,5744376,5744491,5752238,5752315,5771360,5771996,5773653,5773733 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
