TE_37
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJr |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | ENSG00000233542 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.46 |
| Counts of samples | TCGA_tumor:144; TCGA_normal:4; GTEx:349 |
| TSS | chr1(-):2017267 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_37.1 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2014980,2015000,2015365,2015985,2017241,2017268 |
| teRNA_37.2 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2013735,2013755,2014486,2015000,2015365,2015985,2017241,2017268 |
| teRNA_37.3 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2014980,2015000,2015181,2015985,2017241,2017268 |
| teRNA_37.4 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2013735,2013755,2014486,2015000,2015181,2015985,2017241,2017268 |
| teRNA_37.5 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2013735,2013755,2014486,2015985,2017241,2017268 |
| teRNA_37.6 | ENSG00000233542 | Chimeric | Non-coding | Non-coding | chr1(-):2014980,2015000,2015589,2015985,2017241,2017268 |
| teRNA_37.7 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWTDSVHVDKQRKFGRNDQMQNTCSSLRPAVY* | chr1(-):2013735,2013755,2014486,2015000,2015589,2015985,2017241,2017268 |
| teRNA_37.8 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2014980,2015000,2015365,2016931,2017241,2017268 |
| teRNA_37.9 | ENSG00000233542 | Chimeric | Other | MEVSPFEMGCVLLTQAPEQNPPPCLGTTESAHRGGSSTRLWEQSRESSSDFTPRALDPYTPSIPSQRSSCFLDTWNCFSIGEDPSRALWVGAQGNSCCLFLLLSAGRRYTFPIWHGAERAPLALEGMNILPVS* | chr1(-):2013735,2013755,2014486,2015000,2015365,2016931,2017241,2017268 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
