LTR7B

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000587
TE superfamily	ERV1
TE class	LTR
Species	Catarrhini
Length	464
Kimura value	4.82
Tau index	0.9462
Description	Long terminal repeat of an HERVH endogenous retrovirus
Comment	LTR of an HERVH element active 15 to 40 MYA. About half the copies predate our speciation from Old World monkeys, about 10% is unique to the great ape genomes. A 1 bp sequence starting around pos 180 appears with 1 or 2 copies. The version with 1 copy was named LTR7B1 in the reference.
Sequence	TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCACGTATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCTTAACTGATGACATTCCACCATTGTGATTTGTTTCTGCCCCACCCTAACTGATCAATGTACTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAATTCTCCCCACCCTTGAGAATGTACTTTGTGAGATCCACCCCCTGCCCGCAAAACATTGCTCCTAACTCCACCGCCTATCCCAAAACCTATAAGAACTAATGATAATCCCACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGTGAGACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
LTR7B	DREB2D	300	313	+	16.52	CTAACTCCACCGCC
LTR7B	ERF014	300	314	+	16.36	CTAACTCCACCGCCT
LTR7B	HSFB2A	192	201	+	16.11	AGAAGGTTCT
LTR7B	HSFB2A	223	232	+	16.11	AGAAGGTTCT
LTR7B	KLF5	145	154	+	15.96	GCCCCACCCT
LTR7B	TBX19	444	460	-	15.82	TCACGCGTCCGTGTGAA
LTR7B	HSFB2B	192	202	+	15.78	AGAAGGTTCTT
LTR7B	HSFB2B	223	233	+	15.78	AGAAGGTTCTT
LTR7B	Wt1	177	186	+	15.69	TCTCCCCCAC
LTR7B	Wt1	208	217	+	15.69	TCTCCCCCAC

1 2 3 4 ... 22

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).