MIR3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000974 |
|---|---|
| TE superfamily | L2-end |
| TE class | SINE |
| Species | Mammalia |
| Length | 208 |
| Kimura value | 34.83 |
| Tau index | 0.7446 |
| Description | MIR3 (Mammalian-wide Interspersed Repeat 3) |
| Comment | MIR3 is a pan-mammalian SINE with a 5' end derived from a tRNA, a central deeply-conserved CORE region (shared with other MIRs), and a 3' terminal ~55bp related to an L3 LINE. |
| Sequence |
CTGGCAGAGTGGCTGAGCAGAGAGAGCACGGACTGGGAGTCAGGAGACCTGGGTTCTAGTCCCGGCTCTGCCACTAACTNGCTGTGTGACCTTGGGCAAGTCACTTCACCTCTCTGGGCCTCAGTTTCCTCATCTGTAAAATGAGGGGGTTGGACTAGATGATCTCTAAGGTCCCTTCCAGCTCTGACATTCTATGATTCTATGATTC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MIR3 | ESRRA | 87 | 95 | - | 15.37 | CCAAGGTCA |
| MIR3 | pita | 52 | 69 | - | 15.12 | AGAGCCGGGACTAGAACC |
| MIR3 | Esrrg | 87 | 95 | - | 14.81 | CCAAGGTCA |
| MIR3 | ERR | 87 | 94 | - | 14.77 | CAAGGTCA |
| MIR3 | ZNF768 | 108 | 116 | + | 14.62 | ACCTCTCTG |
| MIR3 | ESRRB | 86 | 95 | - | 14.41 | CCAAGGTCAC |
| MIR3 | Hr39 | 87 | 94 | - | 14.02 | CAAGGTCA |
| MIR3 | hr3 | 84 | 91 | - | 13.92 | GGTCACAC |
| MIR3 | NR5A1 | 87 | 98 | - | 13.84 | TGCCCAAGGTCA |
| MIR3 | sex-1 | 86 | 93 | - | 13.51 | AAGGTCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
