L1M5_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000008 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Theria_mammals |
| Length | 3294 |
| Kimura value | 29.26 |
| Tau index | 0.8761 |
| Description | ORF2 from L1 retrotransposon, L1M5_orf2 subfamily |
| Comment | Present in eutherians. |
| Sequence |
ATGGTAGATTTAAACCCAANCATATCAATAATTACATTAAATGTAAATGGNCTAAACACTCCAATTAAAAGGCAGAGATTGTCAGACTGGATAAAAAAACAAGACCCAACTATATGCTGTCTACAAGAGACGCACTTTAAATATAAAGACACAGANAGGTTGAAAGTAAAAGGATGGAAAAAGATATACCATGCAAACACTAANCAAAAGAAAGCTGGNGTGGCTATATTAATATCAGACAAAGTAGACTTCAAGGCAAGAAATATTACCAGAGATAAAGAGGGACATTTCATAATGATAAAAGGGTCAATTCATCAAGAAGACATAACAATCCTAAATGTGTATGCACCTAATAACAGAGCTTCAAAATACATGAAGCAAAAACTGACAGAACTAAAAGGAGAAATAGACAAATCCACAATTATAGTNGGAGATTTTAACACNCCTCTCTCAGTAATTGATAGAACAAGTAGACAAAAAATCAGTAAGGATATAGAAGATTTGAACAACACTATCAACCAACTTGACCTAATTGACATTTATAGAACACTNCACCCAACAACNGCAGAATACACATTCTTTTCAAGTGCACATGGAACATTTACCAAGATAGACCATATNCTGGGCCATAAAACAAGTCTCAATAAATTTNAAAGGATTGAAATCATACAGAGTATGTTCTCTGACCACAATGGAATTAAATTAGAAATCAATAACAAAAAGATANCTAGAAAATCCCCAAATATTTGGAAATTAAACAACACACTTCTAAATAACCCATGGGTCAAAGAAGAAATCACAANGGAAATTAGAAAATATTTTGAACTGAATGANAATGAAAATACAACATATCAAAATTTGTGGGATGCAGCTAAAGCAGTGCTTAGAGGGAAATTTATAGCNTTAAATGCNTATATTAGAAAAGAAGAAAGGCTTAAAATCAATGATCTAAGCTTCCACCTTAAGAAGCTAGAAAAAGAAGAGCAAATTAAACCCAAAGNAAGTAGAAGGAAGGAAATAATAAAGATAAGAGCAGAAATCAATGAAATAGAAAACAAANANACAATAGAGAAAATCAACGAAGCCAAAAGCTGGTTCTTTGAAAAGATCAATAAAATTGATAAACCTCTAGCNAGACTGATCAAGAAAAAAAGAGAGAAGACACAAATTACCAATATCAGGAATGAAAAAGGAGACATCACTACAGATCCTACAGACATTAAAAGGATAATAAGAGAATATTATGAACAACTTTATGCCAATAAATTTGANAACTTAGATGAAATGGACAAATTCCTTGAAAAACACAANTTACCAAAACTGACNCAAGAAGAAATAGAAAATCTGAATAGCCCTATATCTATTAAAGAAATTGAATTTGTAATTAAAAACCTTCCCACAAAGAAAACTCCAGGCCCAGATGGCTTCACTGGTGAATTCTACCAAACATTTAAGGAAGAAATAATACCAATCTTACACAAACTCTTCCAGAAAATAGAAAAAGAGGGAACACTTCCCAACTCATTTTATGAGGCCAGCATNACCCTGATACCAAAACCNGACAAAGACATTACAAGAAAAGAAAATTACAGACCAATATCCCTCATGAACATAGATGCAAAAATCCTNAACAAAATATTAGCAAATCGAATCCAGCAATATATAAAAAGGATAATACATCATGACCAAGTGGGGTTTATCCCAGGAATGCAAGGTTGGTTTAACATTCGAAAATCAATCAATGTAATTCACCATATTAACAGAATAAAGGAGAAAAATCATATGATCATCTCAATAGATGCAGAAAAAGCATTTGACAAAATTCAACACCCATTCATGATAAAAACTCTCAGCAAACTAGGAATAGAAGGGAACTTCCTCAACCTGATAAAGGGCATCTACGAAAAACCTACAGCNAACATCATACTTAATGGTGAAANACTGAANGCTTTCCCCCTAAGATCGGGAACAAGACAAGGATGTCCGCTNTCACCACTTCTATTCAACATTGTACTGGAGGTCCTAGCCAGTGCAATAAGGCAAGAAAAAGAAATAAAAGGCATAAAGATTGGAAAGGAAGAAATAAAACTGTCNTTATTCGCAGATGACATGATTGTNTACGTAGAAAATCCNAAAGAATCTACAAANAAACTACTAGAACTAATAAGTGAATTTAGCAAGGTCGCNGGATACAAGGTCAATATACAAAAATCAATTGTATTTCTATATACTAGCAACAAACAATTGGAAAATGAAATTTNAAAAACAATACCATTTACAATAGCATCAAAAAACATNAAATACTTAGGAATAAATCTAACAAAANATGTGCAAGACCTNTACACTGAAAACTACAAAACATTGCTGAGAGAAATTAAAGAAGACCTAAATAAATGGAGAGATATACCATGTTCATGGATTGGAAGACTCAATATTGTNAAGATGTCAATTCTCCCCAAATTGATCTATAGATTCAATGCAATCCCAATCAAAATCCCAGCAGGTTTTTTTGTAGAAATTGACAAGCTGATTCTAAAATTTATATGGAAATGCAAAGGACCNAGAATAGCCAAAACAATCTTGAAAAAGAAGAACAAAGTTGGAGGACTTACACTACCNGATNTCAAGACTTATTATAAAGCTACAGTAATCAAGACAGTGTGGTATTGGCGTAAGGATAGACAAATAGATCAATGGAACAGAATAGAGAGTCCAGAAATAGACCCACACATATATGGNCANTTGATTTTTGACAAAGGTGCCAANGCAATTCAGTGGGGAAAGGATAGTCTTTTCAACAAATGGTGCTGGAACAATTGGATATCCATATGGAAAAAAATGAANCTCGACCCCTACCTCACACCATACACAAAAATTAATTCNAGATGGATCATAGACCTAAATGTAAAAGNTAAAACTATAAAACTTCTAGAAGAAAACATAGGAGAATATCTTCGTGACCTTGGGNTAGGCAAAGATTTCTTAAACAGGACACAAAAAGCACNAACCATAAAAGAAAAAATTGATAAATTGGACTNCATCAAAATTAAAAACTTCTGCTCNTCAAAAGACACCGTTAAGAAAATGAAAAGGCAAGCCACAGANTGGGAGAAAATATTTGCAANACATATATCTGACAAAGGACTCGTATCCAGAATATATAAAGAACTCCTACAANTCAATAANAAAAAGACAAACAACCCAATANAAAAATGGGCAAAAGACTTGAACAGACACTTCACAAAAGAAGATATNCAAATGGCCAATAAGCACATGAAAAGATGCTCAACNTCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1M5_orf2 | ZNF382 | 1191 | 1214 | + | 36.22 | AGGAGACATCACTACAGATCCTAC |
| L1M5_orf2 | HSFB3 | 2923 | 2934 | + | 17.20 | AAACTTCTAGAA |
| L1M5_orf2 | cad | 625 | 635 | + | 16.59 | GGCCATAAAAC |
| L1M5_orf2 | ZNF354A | 293 | 312 | + | 16.56 | TAATGATAAAAGGGTCAATT |
| L1M5_orf2 | CDX1 | 625 | 634 | + | 16.42 | GGCCATAAAA |
| L1M5_orf2 | ONECUT3 | 705 | 716 | + | 16.37 | AGAAATCAATAA |
| L1M5_orf2 | MGP | 3187 | 3199 | + | 16.32 | AAAAAGACAAACA |
| L1M5_orf2 | lsl-1 | 2642 | 2652 | + | 16.22 | CTACAGTAATC |
| L1M5_orf2 | Msgn1 | 2797 | 2806 | + | 16.17 | AACAAATGGT |
| L1M5_orf2 | HSFA4A | 2921 | 2934 | + | 16.00 | TAAAACTTCTAGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
