MER4A1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000795 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 472 |
| Kimura value | 9.11 |
| Tau index | 0.9306 |
| Description | MER4A1 Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTGAAAGGAAAATAAATCTTGGGGCCCCAAAATCACTAAGCTAAAGGGAAAAGTCAAGCTGGGAACTGCTTAGGGCAAACCTGCCTCCCATTCTATTCAAAGTCACCCCTCTGCTCACTGAGATAAATGCATATCTGATTGCCTCCTTTGGAGAGGCTAATCAGAAACTCAAAAGAATGCAACCATTTGTCTCTCACCTACCTGTGACCTGGAAGCCCCCTCCCCGCTTCGAGTCNTCCCGCCTTTGCTTCGAGTTGTCCCGCCTTTCCGGACCGAACCAATGTNCATCTTACATATGTTGATTGATGTCTCATGTCTCCCTAAAATGTATAAAACCAAGCTGTGCCCCGACCACCTTGGGCACATGTCGTCAGGACCTCCTGAGGCTGTGTCACGGGCGCGCGTCCTCAACCTTGGCAAAATAAACTTTCTAAATTAACTGAGACCTGTCTCAGATTTTCGGGGTTCACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER4A1 | PATZ1 | 217 | 227 | - | 17.91 | CGGGGAGGGGG |
| MER4A1 | Msgn1 | 183 | 192 | - | 17.20 | GACAAATGGT |
| MER4A1 | ZNF148 | 218 | 227 | + | 17.19 | CCCCTCCCCG |
| MER4A1 | WRKY50 | 50 | 58 | - | 16.45 | TTGACTTTT |
| MER4A1 | MYB17 | 194 | 204 | + | 16.25 | CTCACCTACCT |
| MER4A1 | MAZ | 218 | 225 | + | 16.08 | CCCCTCCC |
| MER4A1 | SP1 | 218 | 226 | - | 16.06 | GGGGAGGGG |
| MER4A1 | PBX1 | 300 | 308 | - | 15.97 | ATCAATCAA |
| MER4A1 | MYB74 | 194 | 204 | + | 15.97 | CTCACCTACCT |
| MER4A1 | TBXT | 193 | 208 | - | 15.88 | TCACAGGTAGGTGAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
