TE_29
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1M5_orf2 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | NADK |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 1.54 |
| Counts of samples | TCGA_tumor:333; TCGA_normal:19; GTEx:225 |
| TSS | chr1(-):1771375 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_29.1 | NADK | Chimeric | Other | MEMEQEKMTMNKELSPDAAAYCCSACHGDETWSYNHPIRGRAKSRSLSASPALGSTKEFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGENGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTS | chr1(-):1753040,1753060,1753567,1753649,1754051,1754208,1754284,1754383,1754544,1754698,1755374,1755476,1756258,1756343,1756503,1756608,1757181,1757310,1761952,1762035,1765228,1765446,1771273,1771376 |
| teRNA_29.2 | NADK | Chimeric | Other | MEMEQEKMTMNKELSPDAAAYCCSACHGDETWSYNHPIRGRAKSRSLSASPALGSTKEFRRTRSLHGPCPVTTFGPKACVLQNPQTIIATPLSLASQLLPSPAVSHSGQGGVTGQVHVLPQPSDQGVLSGPRAARGQTAPQEEAVTQEEVEALVCGHTQRWVPGPVYDAAAGGSGWAQLSLRAGMGVGQATGHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEARGAGGKGAWGAHGVGGASIHITAPRVGSAGGMSRLALCFQENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGENGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTS | chr1(-):1753040,1753060,1753567,1753649,1754051,1754208,1754284,1754383,1754544,1754698,1755374,1755476,1756258,1756343,1756503,1756657,1757107,1757310,1759101,1759243,1759734,1759902,1761952,1762035,1765228,1765446,1771273,1771376 |
| teRNA_29.3 | NADK | Chimeric | Non-coding | Non-coding | chr1(-):1756323,1756343,1756503,1756608,1757181,1757310,1761952,1762035,1765228,1765446,1771273,1771376 |
| teRNA_29.4 | NADK | Chimeric | Non-coding | Non-coding | chr1(-):1756862,1756882,1757181,1757310,1761952,1762035,1765228,1765446,1771273,1771376 |
| teRNA_29.5 | NADK | Chimeric | Non-coding | Non-coding | chr1(-):1757290,1757310,1761952,1762035,1765228,1765446,1771273,1771376 |
| teRNA_29.6 | NADK | Chimeric | Non-coding | Non-coding | chr1(-):1762015,1762035,1765228,1765446,1771273,1771376 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
