MLT1H2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001131 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 489 |
| Kimura value | 25.76 |
| Tau index | 0.9179 |
| Description | MLT1H2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGACTGTTACATTGGTGGCCCCCAATGAACCACGCCTCCCGGTATTCACGCCCTTGTGTAGTCCCCTCCCACATTGACTCTGGGCTTGGCCATGTGACTTGCTTTGGCCAATGGGACATTAGCAAACGTGATGCAAGCAGAGGCTTGANAAGCGCTTGCGCATTGGGGCTTGTCCTCTTGGAACGCTCCCTCTTGGAANCCAGCTGCCATGCTGTGAAGAAGCCCAGGCTAGNCTGCTGGANGATGAGAGGCCACGTGGAGAGAGGCCCTGGAGGATGAGAGGCCATCTTGGACGTTCCAGCCCCAGCCGAGCTCCCAGCTGAATGCAGCCACATGAGTGACCCCAGCTANACCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCAGCCAACCCACAGAATCGTGAGAAATAATAAATCGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1H2 | ZNF682 | 171 | 181 | - | 17.19 | GGACAAGCCCC |
| MLT1H2 | BHLH72 | 257 | 265 | + | 16.71 | GCCACGTGG |
| MLT1H2 | ZNF682 | 87 | 97 | - | 16.41 | GGCCAAGCCCA |
| MLT1H2 | MAZ | 69 | 76 | + | 16.08 | CCCCTCCC |
| MLT1H2 | USF1 | 95 | 104 | + | 15.90 | GCCATGTGAC |
| MLT1H2 | NFYB | 112 | 120 | - | 15.68 | CCATTGGCC |
| MLT1H2 | ZNF148 | 69 | 78 | + | 15.59 | CCCCTCCCAC |
| MLT1H2 | nhr-86 | 62 | 69 | + | 15.38 | GTGTAGTC |
| MLT1H2 | MYCN | 258 | 265 | + | 15.35 | CCACGTGG |
| MLT1H2 | MYCN | 258 | 265 | - | 15.35 | CCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
