MLT1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001127 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 390 |
| Kimura value | 19.62 |
| Tau index | 0.8578 |
| Description | MLT1B Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1B (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTTATGGGCTGAATTGTGTCCCCCCAAAATTCATATGTTGAAGTCCTAACCCCCAGTACCTCAGAATGTGACTGTATTTGGAGATAGGGCCTTTAAAGAGGTAATTAAGTTAAAATGAGGTCATTAGGGTGGGCCCTAATCCAATATGACTGGTGTCCTTATAAGAAGAGGAGATTAGGACACAGACACGCACAGAGGGAAGACCATGTGAGGACACAGGGAGAAGGCGGCCATCTGCAAGCCAAGGAGAGAGGCCTCAGAAGAAACCAACCCTGCCGACACCTTGATCTCGGACTTCCAGCCTCCAGAACTGTGAGAAAATAAATTTCTGTTGTTTAAGCCACCCAGTCTGTGGTACTTTGTTATGGCAGCCCTAGCAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1B | THRA | 201 | 218 | - | 19.71 | GTGTCCTCACATGGTCTT |
| MLT1B | daf-12 | 181 | 194 | - | 17.64 | GTGCGTGTCTGTGT |
| MLT1B | ATF2 | 116 | 125 | + | 16.97 | ATGAGGTCAT |
| MLT1B | JUND | 115 | 125 | + | 16.55 | AATGAGGTCAT |
| MLT1B | TCP23 | 130 | 137 | - | 16.36 | GGGCCCAC |
| MLT1B | LjSGA_053525.1 | 130 | 137 | - | 16.05 | GGGCCCAC |
| MLT1B | JUN | 116 | 125 | + | 15.84 | ATGAGGTCAT |
| MLT1B | OsI_08196 | 130 | 137 | - | 15.69 | GGGCCCAC |
| MLT1B | ARALYDRAFT_493022 | 130 | 137 | - | 15.63 | GGGCCCAC |
| MLT1B | ARALYDRAFT_495258 | 130 | 137 | - | 15.43 | GGGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
