FRAM
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000147 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 176 |
| Kimura value | 13.33 |
| Tau index | 0.8646 |
| Description | FRAM (Free right Alu monomer) |
| Comment | FRAM is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCNCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FRAM | ZNF460 | 37 | 52 | - | 28.48 | GCCTCAGCCTCCCGAG |
| FRAM | DOF3.6 | 147 | 167 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 148 | 168 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 149 | 169 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 150 | 170 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 151 | 171 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 152 | 172 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 153 | 173 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 154 | 174 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 155 | 175 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
