TE_23
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSx |
|---|---|
| TE superfamily | Alu |
| TE order | SINE |
| Gene | UBE2J2 |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 0.76 |
| Counts of samples | TCGA_tumor:59; TCGA_normal:5; GTEx:83 |
| TSS | chr1(-):1264901 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_23.1 | UBE2J2 | Chimeric | Other | MSCSPNRAGHSWEKRGQPLGVVRPLPAPTLSLVLLSWSPPIASVVPHNRVWLCAGPGSQESLPSERECVFLLPLPFPSMALLLPSPRTSPSLGDAFCSLQPCPLLSFRVSREPLRIATCRGAVLSPQFLSLWYLMLLTTASFLTSGFLTPFPACALAASPPCTGFRGCSAPGAAQACPL* | chr1(-):1255467,1255487,1256045,1256125,1256992,1257130,1257208,1261939,1264881,1264902 |
| teRNA_23.2 | UBE2J2 | Chimeric | Other | MSCSPNRAGHSWEKRGQPLGVVRPLPAPTLSLVLLSWSPPIASVVPHNRVWLCAGPGSQESLPSERECVFLLPLPFPSMALLLPSPRTSPSLGDAFCSLQPCPLLSFRVSREPLRIATCRGAVLSPQFLSLWYLMLLTTASFLTSGFLTPFPACALAASPPCTGFRGCSAPGAAQACPL* | chr1(-):1256105,1256125,1256992,1257130,1257208,1261939,1264881,1264902 |
| teRNA_23.3 | UBE2J2 | Chimeric | Other | MSCSPNRAGHSWEKRGQPLGVVRPLPAPTLSLVLLSWSPPIASVVPHNRVWLCAGPGSQESLPSERECVFLLPLPFPSMALLLPSPRTSPSLGDAFCSLQPCPLLSFRVSREPLRIATCRGAVLSPQFLSLWYLMLLTTASFLTSGFLTPFPACALAASPPCTGFRGCSAPGAAQACPL* | chr1(-):1257110,1257130,1257208,1261939,1264881,1264902 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
