TE_32
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSx3, SVA_B |
|---|---|
| TE superfamily | Alu, SVA |
| TE class | Retroposon, SINE |
| Gene | GNB1 |
| Class | Chimeric |
| Coding | Non-coding, Annoated, Truncated, Chimeric_truncated, Other |
| Tumor-specific score | 1.59 |
| Counts of samples | TCGA_tumor:347; TCGA_normal:17; GTEx:228 |
| TSS | chr1(-):1840437 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_32.1 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1840403,1840438 |
| teRNA_32.2 | GNB1 | Chimeric | Chimeric_truncated | MSELDQLRQEAEQLKNQIRITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1825397,1825499,1839190,1839238,1840403,1840438 |
| teRNA_32.3 | GNB1 | Chimeric | Other | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD | chr1(-):1787417,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1840403,1840438 |
| teRNA_32.4 | GNB1 | Chimeric | Other | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCSFQMAMHLPLAQTTPPAGCLTFVLTRSS* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1840403,1840438 |
| teRNA_32.5 | GNB1 | Chimeric | Truncated | MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1839190,1839238,1840403,1840438 |
| teRNA_32.6 | GNB1 | Chimeric | Non-coding | Non-coding | chr1(-):1793291,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1840403,1840438 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
