TE_33
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluY |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | GNB1 |
| Class | Chimeric |
| Coding | Annoated |
| Tumor-specific score | 1.25 |
| Counts of samples | TCGA_tumor:560; TCGA_normal:15; GTEx:488 |
| TSS | chr1(-):1884924 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_33.1 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1876583,1876806,1879787,1879902,1884640,1884925 |
| teRNA_33.2 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1879787,1879902,1884640,1884925 |
| teRNA_33.3 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1852570,1852680,1853152,1853297,1879787,1879902,1884640,1884925 |
| teRNA_33.4 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1876583,1876806,1879787,1879867,1884640,1884925 |
| teRNA_33.5 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1879787,1879867,1884640,1884925 |
| teRNA_33.6 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1852570,1852680,1853152,1853297,1879787,1879867,1884640,1884925 |
| teRNA_33.7 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1847878,1848036,1848461,1848529,1852570,1852680,1853152,1853297,1884640,1884925 |
| teRNA_33.8 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1852570,1852680,1853152,1853297,1884640,1884925 |
| teRNA_33.9 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1853152,1853297,1884640,1884925 |
| teRNA_33.10 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1847878,1848036,1848461,1848529,1853152,1853297,1884640,1884925 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
