TE_25
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSx3 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | MRPL20 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.37 |
| Counts of samples | TCGA_tumor:615; TCGA_normal:16; GTEx:189 |
| TSS | chr1(-):1407804 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_25.1 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1402236,1402256,1405809,1405886,1406909,1407019,1407131,1407330,1407731,1407805 |
| teRNA_25.2 | MRPL20 | Chimeric | Other | MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTVSVDPGHPPASALAAPAFLRRDPASVQPPGHPQPLPFIPCFETPTNYVAPQANCGTSVLPPRRHPHCHPLLQPLARATAEPP* | chr1(-):1402236,1402256,1405809,1407019,1407131,1407330,1407731,1407805 |
| teRNA_25.3 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1405866,1405886,1406909,1407019,1407131,1407330,1407731,1407805 |
| teRNA_25.4 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1406326,1406346,1406909,1407019,1407131,1407330,1407731,1407805 |
| teRNA_25.5 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1402236,1402256,1405809,1405886,1406909,1407019,1407131,1407437,1407731,1407805 |
| teRNA_25.6 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1402236,1402256,1405809,1407019,1407131,1407437,1407731,1407805 |
| teRNA_25.7 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1405866,1405886,1406909,1407019,1407131,1407437,1407731,1407805 |
| teRNA_25.8 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1406326,1406346,1406909,1407019,1407131,1407437,1407731,1407805 |
| teRNA_25.9 | MRPL20 | Chimeric | Non-coding | Non-coding | chr1(-):1402236,1402256,1405809,1405886,1406909,1407019,1407131,1407322,1407731,1407805 |
| teRNA_25.10 | MRPL20 | Chimeric | Other | MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTVSVDPGHPPASALAAPAFLRRDPASVQPPGHPQPLPFIPCFETPTNYVAPQANCGTSVLPPRRHPHCHPLLQPLARATAEPP* | chr1(-):1402236,1402256,1405809,1407019,1407131,1407322,1407731,1407805 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
