MIR1_Amn
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001253 |
|---|---|
| TE superfamily | L2-end |
| TE order | SINE |
| Species | Amniota |
| Length | 230 |
| Kimura value | 29.82 |
| Tau index | 0.6159 |
| Description | MIR-like SINE. |
| Comment | - |
| Sequence |
TAGGGAGGCAGTGTGGTCTAGTGGATAGAGCACTGGACTGGGACTCGGGAGACCTGGGTTCNANTCCCGGCTCTGCCACTNGCCNGCTGNGTGACCTTGGGCAAGTCACTTNACCTCTCTGNGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATGATACTGACCTCCTTTGTAAAGTGCTTTGAGATCTACTGATGAAAAGTGCTACATAAGAGCTAGGTATTATTAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MIR1_Amn | ESRRA | 92 | 100 | - | 15.37 | CCAAGGTCA |
| MIR1_Amn | Esrrg | 92 | 100 | - | 14.81 | CCAAGGTCA |
| MIR1_Amn | ERR | 92 | 99 | - | 14.77 | CAAGGTCA |
| MIR1_Amn | ZNF768 | 113 | 121 | + | 14.62 | ACCTCTCTG |
| MIR1_Amn | ESRRB | 91 | 100 | - | 14.41 | CCAAGGTCAC |
| MIR1_Amn | AT5G05790 | 146 | 159 | - | 14.14 | ATCATTATCCCCAT |
| MIR1_Amn | Hr39 | 92 | 99 | - | 14.02 | CAAGGTCA |
| MIR1_Amn | NR5A1 | 92 | 103 | - | 13.84 | TGCCCAAGGTCA |
| MIR1_Amn | sex-1 | 91 | 98 | - | 13.51 | AAGGTCAC |
| MIR1_Amn | At3g11280 | 146 | 159 | - | 13.48 | ATCATTATCCCCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
