MER9a2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000970 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 513 |
| Kimura value | 3.85 |
| Tau index | 0.0000 |
| Description | MER9a2 Long Terminal Repeat for ERVK endogenous retrovirus |
| Comment | MER9a2 is a very minor variant of MER9a1. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTTGGGAACAGGCCCCCCAAAATCTGGCCATAAACTGGCCCCAAAACTGGCCATAAACAAAATCTCTGCAGCACTGTGACATGTTCATGATGGCCATAACGCCCACGCTGGAAGGTTGTGGGTTTACCGGAATGAGGGCAAGGAACACCTGGCCCGCCCAGGGCGGAAAACCGCTTAAAGGCATTCTTAAGCCACAAACAATAGCATGAGCGATCTGTGCCTTAAGGACATGCTCCTGCTGCAGNTAACTAGCCCAACCCATCCCTTTANTTCGGCCCATCCCTTCGTTTCCCATAAGGGATACTTTTAGTTAATCTAATATCTATAGAAACAATGCTAATGACTGGCTTGCTGTTAATAAATACGTGGGTAAATCTCTGTTCGGGGCTCTCAGCTCTGAAGGCTGTGAGACCCCTGATTTCCCACTTCACACCTCTATATTTCTGTGTGTGTGTCTTTAATTCCTCTAGCGCCGCTGGGTTAGGGTCTCCCCGACCGAGCTGGTCTCGGCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER9a2 | cg | 446 | 456 | - | 19.33 | ACACACACACA |
| MER9a2 | EGR2 | 100 | 110 | + | 18.21 | ACGCCCACGCT |
| MER9a2 | EGR1 | 100 | 109 | + | 17.62 | ACGCCCACGC |
| MER9a2 | TBX20 | 427 | 437 | - | 17.50 | GAGGTGTGAAG |
| MER9a2 | EGR3 | 100 | 110 | + | 16.98 | ACGCCCACGCT |
| MER9a2 | cg | 444 | 454 | - | 16.63 | ACACACACAGA |
| MER9a2 | EGR4 | 100 | 110 | + | 16.24 | ACGCCCACGCT |
| MER9a2 | TBX3 | 428 | 436 | - | 16.16 | AGGTGTGAA |
| MER9a2 | cg | 448 | 458 | - | 16.11 | AGACACACACA |
| MER9a2 | TBR1 | 428 | 436 | - | 16.00 | AGGTGTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
