MLT1C2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001221 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 461 |
| Kimura value | 21.32 |
| Tau index | 0.8666 |
| Description | Mammalian long terminal repeat (MLT1C subfamily) |
| Comment | Specific to boreoeutherians. |
| Sequence |
TGTTGTGGGTTGAATTGTGTCCCCCAAAAAGATATGTTCAAGTCCTAACCCCCGGNACCTGTGAATGTGACCTTATTTGGAAATAGGGTCTTTGCAGATGTAATCAAGTTAAGATGAGGTCATACTGGATTAGGGTGGGCCCTAATCCAATGACTGGTGTCCTTATAAGAAGAGGGAAATNTGGACACAGAGACACACAGGGAGAAGGCCATGTGAAGACGGAGGCAGAGATTGGAGTGATGCGGCTACAAGCCAAGGAACGCCAAGGATTGCCGGCAACCACCAGAAGCTAGGAAGAGGCAAGGAAGGATTCTCCCCTAGAGCCTTCAGAGGGAGCACGGCCCTGCCGACACCTTGATTTCGGACTTCTGGCCTCCAGAACTGTGAGAGAATAAATTTCTGTTGTTTTAAGCCACCCAGTTTGTGGTANTTTGTTACGGCAGCCCTAGGAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1C2 | JUND | 113 | 123 | + | 17.06 | GATGAGGTCAT |
| MLT1C2 | ATF2 | 114 | 123 | + | 16.97 | ATGAGGTCAT |
| MLT1C2 | TCP23 | 135 | 142 | - | 16.36 | GGGCCCAC |
| MLT1C2 | LjSGA_053525.1 | 135 | 142 | - | 16.05 | GGGCCCAC |
| MLT1C2 | SRF | 68 | 83 | - | 15.95 | TTTCCAAATAAGGTCA |
| MLT1C2 | JUN | 114 | 123 | + | 15.84 | ATGAGGTCAT |
| MLT1C2 | OsI_08196 | 135 | 142 | - | 15.69 | GGGCCCAC |
| MLT1C2 | AG | 68 | 83 | - | 15.68 | TTTCCAAATAAGGTCA |
| MLT1C2 | ARALYDRAFT_493022 | 135 | 142 | - | 15.63 | GGGCCCAC |
| MLT1C2 | ARALYDRAFT_495258 | 135 | 142 | - | 15.43 | GGGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
