MLT1G3

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001013
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	595
Kimura value	25.91
Tau index	0.9807
Description	MLT1G3 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGCAGATTGTATTTTCCAAAGATGGCCGCAACAATATCTCCCATCCCACATGCTCTTCTTACAATGTGACCTTGACACTCCTCCCATCGAGAGGTGGGGTCTATGTCCCCTCCCCTTGAATCTGGGCGGGCCTTTGTGACTGCCTCGACCAATAGAATACGGCGGAAGTGACGCTGTGTGACTTCCGAGGCTAGGTCATAAAAAGGCCATGCAGCTTCCGCCTTGCTCTCTTGGGACGCTCGCTCTTGGAACCCAGCCGCCATGCTGTGAGGAAGCCCAAGCCACATGGAGAGGCCACGTGTAGGTGTTCCGGCCGACAGCCCCAGCTGAGGTCCCAGCCGACAGCCAGCATCAACCGCCAGACATGTGAGTGAAGAAGCCTCCAGATGATTCCAGCCCCCAGCCGTCGAGTCACCCCCAGCCTTCGAGTCTTCCCAGCTGAGGCCCCAGACATCGTGGAGCAGAGACAAGCCATCCCCGCTGTGCCCTGTCCGAATTCCTGACCCACAGAATCCGTGAGCATAATAAAATGGTTGTTTTANGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGGAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1G3	EREB138	257	266	+	17.89	CAGCCGCCAT
MLT1G3	HLH4C	323	336	-	17.75	ACCTCAGCTGGGGC
MLT1G3	HLH4C	323	336	+	17.67	GCCCCAGCTGAGGT
MLT1G3	RARA	196	212	+	17.56	AGGTCATAAAAAGGCCA
MLT1G3	RARA::RXRG	196	212	+	17.03	AGGTCATAAAAAGGCCA
MLT1G3	Rarb	196	212	+	16.82	AGGTCATAAAAAGGCCA
MLT1G3	ESRRB	69	78	-	16.36	TCAAGGTCAC
MLT1G3	ESRRA	70	78	-	16.33	TCAAGGTCA
MLT1G3	AS2	163	180	+	16.25	CGGCGGAAGTGACGCTGT
MLT1G3	Nr5A2	70	78	+	16.13	TGACCTTGA

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).