Tumor-specific transcripts
| TE_ID |
TE_family |
TE_superfamily |
TE_class |
Gene |
Class |
Coding |
Tumor-specific score |
Count |
|
TE_18662
|
AluJr
|
Alu |
SINE |
CCDC25 |
Chimeric |
Non-coding |
0.07 |
41 |
|
TE_27451
|
L4_A_Mam
|
RTE-X |
LINE |
DCUN1D2 |
Chimeric |
Non-coding, Other |
0.07 |
31 |
|
TE_9233
|
AluY
|
Alu |
SINE |
- |
Intergenic |
Other |
0.07 |
24 |
|
TE_17208
|
AluSx
|
Alu |
SINE |
- |
Intergenic |
Non-coding |
0.06 |
387 |
|
TE_8637
|
Charlie1
|
Charlie |
DNA |
- |
Intergenic |
Non-coding |
0.06 |
109 |
|
TE_34152
|
AluSx1
|
Alu |
SINE |
ENSG00000268401, - |
Chimeric, Intergenic |
Non-coding |
0.06 |
77 |
|
TE_17501
|
SVA_C, SVA_F
|
SVA |
Retroposon |
- |
Intergenic |
Non-coding, Other |
0.06 |
63 |
|
TE_22395
|
LTR7B
|
ERV1 |
LTR |
- |
Intergenic |
Non-coding |
0.06 |
43 |
|
TE_8746
|
MSTD
|
MaLR |
LTR |
AMOTL2 |
Chimeric |
Non-coding, Other |
0.06 |
38 |
|
TE_438
|
L2c_3end
|
L2 |
LINE |
- |
Intergenic |
Non-coding |
0.06 |
37 |
|
TE_23592
|
AluSc
|
Alu |
SINE |
- |
Intergenic |
Non-coding |
0.06 |
27 |
|
TE_33577
|
MamSINE1
|
RTE-end |
SINE |
- |
Intergenic |
Non-coding |
0.06 |
25 |
|
TE_1202
|
AluJr
|
Alu |
SINE |
GPATCH4, - |
Chimeric, Intergenic |
Non-coding, Other |
0.06 |
21 |
|
TE_37233
|
SVA_A
|
SVA |
Retroposon |
- |
Intergenic |
Non-coding |
0.06 |
12 |
|
TE_12689
|
L1P3_5end, L1PA10_5end
|
L1 |
LINE |
CMYA5 |
Chimeric |
Non-coding |
0.06 |
7 |
|
TE_2610
|
MSTB
|
MaLR |
LTR |
PTGFR |
Chimeric |
Non-coding |
0.06 |
5 |
|
TE_15535
|
HERVE
|
ERV1 |
LTR |
-, ENSG00000287860 |
Chimeric, Intergenic |
Non-coding |
0.06 |
4 |
|
TE_32054
|
L1MB7_3end
|
L1 |
LINE |
-, DOC2B |
Chimeric, Intergenic |
Non-coding |
0.05 |
243 |
|
TE_8678
|
L2a_3end
|
L2 |
LINE |
RAB43, ISY1-RAB43 |
Chimeric |
Non-coding |
0.05 |
109 |
|
TE_29185
|
AluSx1
|
Alu |
SINE |
ENSG00000260729 |
Chimeric |
Other |
0.05 |
85 |
|
TE_22669
|
AluSp
|
Alu |
SINE |
- |
Intergenic |
Non-coding |
0.05 |
77 |
|
TE_26317
|
AluSp
|
Alu |
SINE |
- |
Intergenic |
Non-coding |
0.05 |
76 |
|
TE_2268
|
AluSx
|
Alu |
SINE |
TFAP2E |
Chimeric |
Non-coding |
0.05 |
63 |
|
TE_15009
|
L2, L2a_3end
|
L2 |
LINE |
ARMC2 |
Chimeric |
Non-coding |
0.05 |
62 |
|
TE_22515
|
SVA_E, AluSp, AluJr
|
Alu, SVA |
Retroposon, SINE |
OGA |
Chimeric |
Non-coding |
0.05 |
53 |
|
TE_34508
|
AluYa5
|
Alu |
SINE |
ZNF846 |
Chimeric |
Non-coding |
0.05 |
43 |
|
TE_13200
|
AluJb
|
Alu |
SINE |
LTC4S |
Chimeric |
Non-coding, Other |
0.05 |
43 |
|
TE_18501
|
L2b_3end
|
L2 |
LINE |
- |
Intergenic |
Non-coding |
0.05 |
21 |
|
TE_8194
|
MLT1L
|
MaLR |
LTR |
LRRC2 |
Annoated |
Other |
0.05 |
17 |
|
TE_3665
|
LTR78
|
ERV1 |
LTR |
ENSG00000291325 |
Annoated |
Non-coding |
0.05 |
3 |
|
TE_34042
|
LTR12C
|
ERV1 |
LTR |
- |
Intergenic |
Non-coding |
0.04 |
124 |
|
TE_34324
|
MER21B, MER21A
|
ERV3 |
LTR |
ZNF471 |
Chimeric |
Non-coding |
0.04 |
103 |
|
TE_19301
|
AluJr
|
Alu |
SINE |
TMEM71 |
Chimeric |
Non-coding |
0.04 |
75 |
|
TE_30033
|
AluSc5
|
Alu |
SINE |
TPSB2 |
Chimeric |
Non-coding |
0.04 |
59 |
|
TE_33398
|
MLT1A
|
MaLR |
LTR |
INO80C, ENSG00000267140 |
Chimeric |
Non-coding |
0.04 |
15 |
|
TE_11599
|
LTR12C, LTR12E
|
ERV1 |
LTR |
GUSBP15, GUSBP14 |
Chimeric |
Non-coding |
0.04 |
10 |
|
TE_29515
|
L1M1_orf2
|
L1 |
LINE |
DNM1P32 |
Chimeric |
Other |
0.04 |
7 |
|
TE_15333
|
L1P1_5end
|
L1 |
LINE |
WTAP |
Chimeric |
Other |
0.03 |
73 |
|
TE_27433
|
L1M3e_5end
|
L1 |
LINE |
- |
Intergenic |
Non-coding |
0.03 |
59 |
|
TE_22699
|
L1MC4a_3end
|
L1 |
LINE |
BET1L |
Chimeric |
Non-coding |
0.03 |
4 |
|
TE_30949
|
MIRb
|
L2-end |
SINE |
NPIPB8 |
Chimeric, Annoated |
Non-coding |
0.02 |
30 |
|
TE_30831
|
MIRb
|
L2-end |
SINE |
NPIPA3 |
Annoated |
Non-coding |
0.02 |
0 |
|
TE_36674
|
MLT1J
|
MaLR |
LTR |
SMIM11 |
Chimeric |
Non-coding, Other |
0.01 |
1 |
|
TE_30832
|
MIRb
|
L2-end |
SINE |
NPIPA2 |
Annoated |
Non-coding |
0.01 |
1 |
|
TE_21856
|
L1PB_orf2
|
L1 |
LINE |
ENSG00000260370 |
Annoated |
Non-coding |
0.00 |
3 |