TE_15333
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1P1_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | WTAP |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 0.03 |
| Counts of samples | TCGA_tumor:73; TCGA_normal:7; GTEx:3074 |
| TSS | chr6(+):159670967 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15333.1 | WTAP | Chimeric | Other | MQGWFNIRKPINVIQHINRTKDKNHMIISTDAEKALDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTPNIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDTIVYLENPIISAQNLLKLISNFGKVSGYKINMQKSLAFLYINNRQTENKIMSELPFTIASKRIKYLGIQLTRYVKDLFKENYKPLLNEIKEDTNKLKNIPWSWMGRINIVKMAILPKVISTFNAIPIKLPMTFFTELEKTTLKFTWNQKRAHIAKSILSQKNKAGGITLTSNYTTRLQ* | chr6(+):159670968,159671129,159704666,159710352,159719432,159727333,159736258,159736295,159738990,159739045,159742088,159742146,159743665,159743792,159748191,159748369,159753460,159753614,159755028,159755048 |
| teRNA_15333.2 | WTAP | Chimeric | Other | MQGWFNIRKPINVIQHINRTKDKNHMIISTDAEKALDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTPNIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDTIVYLENPIISAQNLLKLISNFGKVSGYKINMQKSLAFLYINNRQTENKIMSELPFTIASKRIKYLGIQLTRYVKDLFKENYKPLLNEIKEDTNKLKNIPWSWMGRINIVKMAILPKVISTFNAIPIKLPMTFFTELEKTTLKFTWNQKRAHIAKSILSQKNKAGGITLTSNYTTRLQ* | chr6(+):159670968,159671129,159704666,159710352,159719432,159727333,159736258,159736295,159738990,159739045,159742088,159742146,159743665,159743792,159748191,159750010,159753460,159753614,159755028,159755048 |
| teRNA_15333.3 | WTAP | Chimeric | Other | MQGWFNIRKPINVIQHINRTKDKNHMIISTDAEKALDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTPNIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDTIVYLENPIISAQNLLKLISNFGKVSGYKINMQKSLAFLYINNRQTENKIMSELPFTIASKRIKYLGIQLTRYVKDLFKENYKPLLNEIKEDTNKLKNIPWSWMGRINIVKMAILPKVISTFNAIPIKLPMTFFTELEKTTLKFTWNQKRAHIAKSILSQKNKAGGITLTSNYTTRLQ* | chr6(+):159670968,159671129,159704666,159710352,159719432,159727333,159736258,159736295,159738990,159739045,159742088,159742146,159743665,159743792,159748191,159748369,159748590,159748610 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
