TE_1202
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJr |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | GPATCH4, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.06 |
| Counts of samples | TCGA_tumor:21; TCGA_normal:1; GTEx:408 |
| TSS | chr1(-):156617093 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_1202.1 | - | Intergenic | Non-coding | Non-coding | chr1(-):156615057,156615077,156616483,156616669,156616980,156617094 |
| teRNA_1202.2 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156595829,156595849,156596081,156596131,156596387,156596478,156598035,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.3 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156595829,156595849,156596081,156596131,156596387,156596478,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.4 | GPATCH4 | Chimeric | Other | MNVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGGEKPNKDLESCSDDDNQGSKSPKITSKSARS* | chr1(-):156595829,156595849,156596081,156596248,156596387,156596478,156598035,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.5 | GPATCH4 | Chimeric | Other | MNVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKTAQTLSRN* | chr1(-):156595829,156595849,156596081,156596131,156596387,156596478,156597800,156597885,156598035,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.6 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156595829,156595849,156596081,156598121,156598227,156598319,156598968,156599104,156616980,156617094 |
| teRNA_1202.7 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156595829,156595849,156596081,156596131,156596387,156596478,156598035,156598121,156598227,156598319,156598968,156599104,156616980,156617094 |
| teRNA_1202.8 | GPATCH4 | Chimeric | Other | MNVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKWDPVTSLAVAYLDCPDPQQELRSSGSVDPAIC* | chr1(-):156596111,156596131,156596387,156596478,156597800,156597922,156598035,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.9 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156596458,156596478,156598035,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
| teRNA_1202.10 | GPATCH4 | Chimeric | Non-coding | Non-coding | chr1(-):156598101,156598121,156598227,156598319,156598421,156598494,156598968,156599104,156616980,156617094 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
