TE_29185
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSx1 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | ENSG00000260729 |
| Class | Chimeric |
| Coding | Other |
| Tumor-specific score | 0.05 |
| Counts of samples | TCGA_tumor:85; TCGA_normal:1; GTEx:1831 |
| TSS | chr15(-):72327568 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_29185.1 | ENSG00000260729 | Chimeric | Other | MAAAPGGSAQPAGPGPRLGFSTADSGVGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGRLVQPRGQAGGHRPGARAAADAADGRPPGRLPPRATAARGLRRLHHGDPAAPGGPAGGGTGPRPRPGGGSGGPDATRGGL* | chr15(-):72286322,72286342,72287237,72287392,72288308,72288451,72288868,72288930,72289138,72289287,72289375,72289507,72289627,72289770,72290127,72290255,72304746,72304794,72315845,72315927,72319613,72320702,72327526,72327569 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
