TE_11599
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR12C, LTR12E |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | GUSBP15, GUSBP14 |
| Class | Chimeric |
| Coding | Non-coding |
| Tumor-specific score | 0.04 |
| Counts of samples | TCGA_tumor:10; TCGA_normal:0; GTEx:292 |
| TSS | chr5(-):70585783 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_11599.1 | GUSBP15 | Chimeric | Non-coding | Non-coding | chr5(-):70516462,70516482,70518321,70518405,70522001,70522188,70555218,70555373,70556840,70556873,70585619,70585784 |
| teRNA_11599.2 | GUSBP14 | Chimeric | Non-coding | Non-coding | chr5(-):70220072,70220092,70221931,70222015,70225608,70225795,70258882,70259037,70556840,70556873,70585619,70585784 |
| teRNA_11599.3 | GUSBP15 | Chimeric | Non-coding | Non-coding | chr5(-):70516462,70516482,70518321,70518405,70522001,70522188,70555218,70555373,70585619,70585784 |
| teRNA_11599.4 | GUSBP15 | Chimeric | Non-coding | Non-coding | chr5(-):70516462,70516482,70518321,70518405,70522001,70522188,70555218,70555373,70556840,70556873,70580372,70580445,70585619,70585784 |
| teRNA_11599.5 | GUSBP14 | Chimeric | Non-coding | Non-coding | chr5(-):70220072,70220092,70221931,70222015,70225608,70225795,70258882,70259037,70260504,70260537,70585619,70585784 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
