TE_17501
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | SVA_C, SVA_F |
|---|---|
| TE superfamily | SVA |
| TE class | Retroposon |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.06 |
| Counts of samples | TCGA_tumor:63; TCGA_normal:0; GTEx:1163 |
| TSS | chr7(+):149554481 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_17501.1 | - | Intergenic | Other | MQYASGFFQGRPESSTAAGSPRNRWGMVPQAITLLAPSHSSSLVHWSGGQTWGDTSQHTAFPWRADVSPGELLPRRAHSHPCFNLVGQKPGSATLTRETEALQCCPYDQTPVALRLHVNYSPLCDCGPRLGGGGLDSRVCSYEMIGNSNFVLWATGSPVCCNEEPGQVLCLRRSFRRHYRYWFGVCRKTRTGTGVIF* | chr7(+):149554482,149554516,149554693,149558012,149599243,149599263 |
| teRNA_17501.2 | - | Intergenic | Other | MQYASGFFQGRPESSTAAGSPRNRWGMVPQAITLLAPSHSSSLVHWSGGQTWGDTSQHTAFPWRADVSPGELLPRRAHSHPCFNLVGQKPGSATLTRETEALQCCPYDQTPVALRLHVNYSPLCDCGPRLGGGGLDSRVCSYEMIGNSNFVLWATGSPVCCNEEPGQVLCLRRSFRRHYRYWFGVCRKTRTGTGVIF* | chr7(+):149554482,149554516,149554693,149558424,149558550,149558570 |
| teRNA_17501.3 | - | Intergenic | Non-coding | Non-coding | chr7(+):149554482,149554516,149554566,149554835,149554914,149554934 |
| teRNA_17501.4 | - | Intergenic | Non-coding | Non-coding | chr7(+):149554482,149554516,149554566,149554917,149554968,149554988 |
| teRNA_17501.5 | - | Intergenic | Other | MQYASGFFQGRPESSTAAGSPRNRWGMVPQAITLLAPSHSSSLVHWSGGQTWGDTSQHTAFPWRADVSPGELLPRRAHSHPCFNLVGQKPGSATLTRETEALQCCPYDQTPVALRLHVNYSPLCDCGPRLGGGGLDSRVCSYEMIGNSNFVLWATGSPVCCNEEPGQVLCLRRSFRRHYRYWFGVCRKTRTGTGVIF* | chr7(+):149554482,149554516,149554566,149558012,149599243,149599263 |
| teRNA_17501.6 | - | Intergenic | Non-coding | Non-coding | chr7(+):149554482,149554516,149554566,149554741,149554790,149554810 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
