MLT1J
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001018 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 512 |
| Kimura value | 31.43 |
| Tau index | 0.7900 |
| Description | MLT1J Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1J has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGAGACTGCTAGTTGTCCCCCAATATCCATTCTCCCCTTCTTCCTTAGTAATAGAACCCCCGATTTTTAGCTGGGCACATGGCCGCCCAGAATAAAGACTACATTTCCCAGCCTCCCTTGCAGCTAGGTGTGGCCATGTGACTAAGTTCTGGCCAATGGGATGTAAGCGGAAGTGNCGTGTGCAACTTCCGGGAAGTGTCCTTAAAGGGAGGGGGCGTGCCCTTCTTTTCCCCTTCCTCCTTCCTGCTGNCTGGAATGCGGACGTGATGGCTGGAGCTCNAGCAGCCATCTTGGACCATGAGGTGGAAGCCACGTGCTGAGGATGGCGGAGCAACAAGATAGAAGGAGCCTGGGTCCCTGATGACCGTGGAGCCGCCATACCAGCCCTGGACTGCCTACCTCCGGACTTCTTTTACGTGAGAGAGAAATAAACTTCTATCTTGTTTAAGCCACTGTTATTTTGGGTTTTCTGTTACTCGCAGCCGAACCTAATCCTAACTGATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1J | ZNF582 | 475 | 493 | + | 22.94 | TCTGTTACTCGCAGCCGAA |
| MLT1J | Thap11 | 104 | 117 | + | 21.93 | ACTACATTTCCCAG |
| MLT1J | ZFP42 | 287 | 299 | - | 19.71 | CAAGATGGCTGCT |
| MLT1J | Bteb2 | 215 | 227 | - | 16.92 | GGCACGCCCCCTC |
| MLT1J | bHLH77 | 312 | 323 | + | 16.46 | GAAGCCACGTGC |
| MLT1J | EREB138 | 376 | 385 | + | 16.31 | GAGCCGCCAT |
| MLT1J | MAX::MYC | 315 | 324 | - | 16.31 | AGCACGTGGC |
| MLT1J | MAZ | 213 | 220 | - | 16.08 | CCCCTCCC |
| MLT1J | ELF2 | 191 | 200 | - | 16.07 | TCCCGGAAGT |
| MLT1J | ZIPIC | 387 | 396 | + | 16.07 | CCAGCCCTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
