TE_36674
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1J |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Gene | SMIM11 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.01 |
| Counts of samples | TCGA_tumor:1; TCGA_normal:0; GTEx:224 |
| TSS | chr21(+):34394207 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_36674.1 | SMIM11 | Chimeric | Non-coding | Non-coding | chr21(+):34394208,34394570,34399711,34399899,34402091,34402111 |
| teRNA_36674.2 | SMIM11 | Chimeric | Non-coding | Non-coding | chr21(+):34394208,34394570,34399711,34399731 |
| teRNA_36674.3 | SMIM11 | Chimeric | Other | MKTWILVLTLLLLLLRTWLGPNWDHLLPLEGPDGVSPLRLPLTHPPPLCRQGRKDNREEGVLLGDHLDNISPMASWIPVDYFASAKPSSQLLGLPSLHLRLLVLPSSGVSSLPGLPLPAAHSSRGCQLPGREKWASWGHLPNFGVFGR* | chr21(+):34394208,34394570,34399711,34399899,34404723,34405112,34407680,34407700 |
| teRNA_36674.4 | SMIM11 | Chimeric | Non-coding | Non-coding | chr21(+):34394208,34394570,34399711,34399899,34402091,34405112,34407680,34407948,34408290,34408420,34412520,34412782,34415686,34415706 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
