TE_181
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2d2_3end |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | ALDH4A1 |
| Class | Chimeric |
| Coding | Non-coding, Other, Truncated |
| Tumor-specific score | 0.43 |
| Counts of samples | TCGA_tumor:745; TCGA_normal:78; GTEx:1870 |
| TSS | chr1(-):18884771 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_181.1 | ALDH4A1 | Chimeric | Truncated | MGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWSYAYMQ* | chr1(-):18871770,18871790,18872804,18872957,18874463,18874581,18875382,18875503,18876315,18876467,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18884691,18884772 |
| teRNA_181.2 | ALDH4A1 | Chimeric | Other | MGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVLRNAAGNFYINDKSTGSIVGQQPFGGARASGTNDKPG | chr1(-):18872937,18872957,18874463,18874581,18875382,18875503,18876315,18876467,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18884691,18884772 |
| teRNA_181.3 | ALDH4A1 | Chimeric | Non-coding | Non-coding | chr1(-):18872937,18872957,18874463,18874581,18875382,18875503,18877208,18877255,18877416,18877612,18879300,18879373,18881700,18881887,18883124,18883198,18883279,18883428,18884691,18884772 |
| teRNA_181.4 | ALDH4A1 | Chimeric | Non-coding | Non-coding | chr1(-):18882652,18882672,18883124,18883198,18883279,18883428,18884691,18884772 |
| teRNA_181.5 | ALDH4A1 | Chimeric | Non-coding | Non-coding | chr1(-):18883178,18883198,18883279,18883428,18884691,18884772 |
1
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
