TE_16188
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 263.74 |
| Counts of samples | TCGA_tumor:701; TCGA_normal:0; GTEx:2 |
| TSS | chr7(-):113743287 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_16188.11 | - | Intergenic | Other | MLNQFWNWITGRGWNSLEGSEEDKKMWESLELPRDLLNGFDKNADSDMNNKVQAEVVSDGDEELVGNWSKGDSCFVLAKRMATFCPCSKDLWNFEVERDYLEYLVEEISKQQSIQGVIWVLLKHSVLKGKQHKSLEIFHADDEIEKKKTLSEENSRRLHIFEVPNVPPQGMSEVFTAAPPIPGLEVSVEKMFFVG* | chr7(-):113638528,113638548,113639959,113642493,113644515,113644632,113722556,113722661,113743246,113743288 |
| teRNA_16188.12 | - | Intergenic | Non-coding | Non-coding | chr7(-):113642473,113642493,113644515,113644612,113722556,113722661,113743246,113743288 |
| teRNA_16188.13 | - | Intergenic | Other | MLNQFWNWITGRGWNSLEGSEEDKKMWESLELPRDLLNGFDKNADSDMNNKVQAEVVSDGDEELVGNWSKGDSCFVLAKRMATFCPCSKDLWNFEVERDYLEYLVEEISKQQSIQGVIWVLLKHSVLKGKQHKSLEIFHADDEIEKKKTLSEENSRRLHIFEVPNVPPQGMSEVFTAAPPIPGLEVSVEKMFFVG* | chr7(-):113638528,113638548,113639959,113642493,113644515,113644612,113722556,113722661,113743246,113743288 |
| teRNA_16188.14 | - | Intergenic | Non-coding | Non-coding | chr7(-):113638528,113638548,113639959,113640376,113642456,113642493,113644515,113644612,113722556,113722661,113743246,113743288 |
| teRNA_16188.15 | - | Intergenic | Non-coding | Non-coding | chr7(-):113641760,113641780,113642456,113642493,113644515,113644612,113722556,113722661,113743246,113743288 |
| teRNA_16188.16 | - | Intergenic | Non-coding | Non-coding | chr7(-):113642473,113642493,113644515,113644632,113722556,113722661,113743246,113743288 |
| teRNA_16188.17 | - | Intergenic | Non-coding | Non-coding | chr7(-):113729227,113729247,113742712,113743288 |
| teRNA_16188.18 | - | Intergenic | Non-coding | Non-coding | chr7(-):113731237,113731257,113742712,113743288 |
| teRNA_16188.19 | - | Intergenic | Non-coding | Non-coding | chr7(-):113727887,113727907,113729152,113729247,113731204,113731257,113742712,113743288 |
| teRNA_16188.20 | - | Intergenic | Non-coding | Non-coding | chr7(-):113727887,113727907,113731204,113731257,113742712,113743288 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
