TE_16188
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 263.74 |
| Counts of samples | TCGA_tumor:701; TCGA_normal:0; GTEx:2 |
| TSS | chr7(-):113743287 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_16188.1 | - | Intergenic | Other | MLNQFWNWITGRGWNSLEGSEEDKKMWESLELPRDLLNGFDKNADSDMNNKVQAEVVSDGDEELVGNWSKGDSCFVLAKRMATFCPCSKDLWNFEVERDYLEYLVEEISKQQSIQGVIWVLLKHSVLKGKQHKSLEIFHADDEIEKKKTLSEENSRRLHIFEVPNVPPQGMSEVFTAAPPIPGLEVSVEKMFFVG* | chr7(-):113638528,113638548,113639959,113642493,113644515,113644612,113722556,113722661,113742712,113743288 |
| teRNA_16188.2 | - | Intergenic | Non-coding | Non-coding | chr7(-):113705155,113705175,113722556,113722661,113742712,113743288 |
| teRNA_16188.3 | - | Intergenic | Non-coding | Non-coding | chr7(-):113722641,113722661,113742712,113743288 |
| teRNA_16188.4 | - | Intergenic | Non-coding | Non-coding | chr7(-):113642473,113642493,113644515,113644632,113722556,113722661,113742712,113743288 |
| teRNA_16188.5 | - | Intergenic | Non-coding | Non-coding | chr7(-):113642473,113642493,113644515,113644612,113722556,113722661,113742712,113743288 |
| teRNA_16188.6 | - | Intergenic | Other | MLNQFWNWITGRGWNSLEGSEEDKKMWESLELPRDLLNGFDKNADSDMNNKVQAEVVSDGDEELVGNWSKGDSCFVLAKRMATFCPCSKDLWNFEVERDYLEYLVEEISKQQSIQGVIWVLLKHSVLKGKQHKSLEIFHADDEIEKKKTLSEENSRRLHIFEVPNVPPQGMSEVFTAAPPIPGLEVSVEKMFFVG* | chr7(-):113638528,113638548,113639959,113642493,113644515,113644632,113722556,113722661,113742712,113743288 |
| teRNA_16188.7 | - | Intergenic | Non-coding | Non-coding | chr7(-):113705316,113705336,113722556,113722661,113742712,113743288 |
| teRNA_16188.8 | - | Intergenic | Non-coding | Non-coding | chr7(-):113638528,113638548,113639959,113640376,113642456,113642493,113644515,113644612,113722556,113722661,113742712,113743288 |
| teRNA_16188.9 | - | Intergenic | Non-coding | Non-coding | chr7(-):113718724,113718744,113722556,113722661,113742712,113743288 |
| teRNA_16188.10 | - | Intergenic | Non-coding | Non-coding | chr7(-):113640356,113640376,113642456,113642493,113644515,113644612,113722556,113722661,113742712,113743288 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
