TE_15987
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE order | LINE |
| Gene | -, SEMA3D |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 176.39 |
| Counts of samples | TCGA_tumor:1251; TCGA_normal:6; GTEx:1 |
| TSS | chr7(-):85250254 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15987.1 | SEMA3D | Chimeric | Other | MNANKDERLKARSQDFHLFPALMMLSMTMLFLPVTGTLKQNIPRLKLTYKDLLLSNSCIPFLGSSEGLDFQTLLLDEERGRLLLGAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNKTHIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESGRLKCPFDPQQPFASVMTDEYLYSGTASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTFFIPDTYNPDDDKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNMELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAPTSKRRARRQDVKYGDPITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKWYIQRSGDEHREELKPDERI | chr7(-):84999845,84999865,85006802,85006941,85012782,85012846,85015059,85015216,85018252,85018293,85020233,85020321,85022391,85022613,85036889,85037033,85040673,85040742,85042171,85042285,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85153608,85153739,85191647,85191788,85224246,85224441,85249853,85249969,85250200,85250255 |
| teRNA_15987.2 | SEMA3D | Chimeric | Non-coding | Non-coding | chr7(-):85050730,85050750,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85153608,85153739,85191647,85191788,85224246,85224441,85249853,85249969,85250200,85250255 |
| teRNA_15987.3 | SEMA3D | Chimeric | Other | MNANKDERLKARSQDFHLFPALMMLSMTMLFLPVTGTLKQNIPRLKLTYKDLLLSNSCIPFLGSSEGLDFQTLLLDEERGRLLLGAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNKTHIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESGRLKCPFDPQQPFASVMTDEYLYSGTASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTFFIPDTYNPDDDKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNMELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAPTSKRRARRQDVKYGDPITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKWYIQRSGDEHREELKPDERI | chr7(-):84999845,84999865,85006802,85006941,85012782,85012846,85015059,85015216,85018252,85018293,85020233,85020321,85022391,85022613,85036889,85037033,85040673,85040742,85042171,85042285,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85191647,85191788,85249853,85249969,85250200,85250255 |
| teRNA_15987.4 | SEMA3D | Chimeric | Non-coding | Non-coding | chr7(-):85050730,85050750,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85191647,85191788,85249853,85249969,85250200,85250255 |
| teRNA_15987.5 | - | Intergenic | Non-coding | Non-coding | chr7(-):85180981,85181001,85181129,85181286,85191647,85191788,85249853,85249969,85250200,85250255 |
| teRNA_15987.6 | SEMA3D | Chimeric | Other | MNANKDERLKARSQDFHLFPALMMLSMTMLFLPVTGTLKQNIPRLKLTYKDLLLSNSCIPFLGSSEGLDFQTLLLDEERGRLLLGAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNKTHIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESGRLKCPFDPQQPFASVMTDEYLYSGTASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTFFIPDTYNPDDDKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNMELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAPTSKRRARRQDVKYGDPITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKWYIQRSGDEHREELKPDERI | chr7(-):84999845,84999865,85006802,85006941,85012782,85012846,85015059,85015216,85018252,85018293,85020233,85020321,85022391,85022613,85036889,85037033,85040673,85040742,85042171,85042285,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85153608,85153739,85191647,85191788,85249853,85249969,85250200,85250255 |
| teRNA_15987.7 | SEMA3D | Chimeric | Non-coding | Non-coding | chr7(-):85050730,85050750,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85153608,85153739,85191647,85191788,85249853,85249969,85250200,85250255 |
| teRNA_15987.8 | - | Intergenic | Non-coding | Non-coding | chr7(-):85221177,85221197,85224246,85224441,85249853,85249969,85250200,85250255 |
| teRNA_15987.9 | SEMA3D | Chimeric | Other | MNANKDERLKARSQDFHLFPALMMLSMTMLFLPVTGTLKQNIPRLKLTYKDLLLSNSCIPFLGSSEGLDFQTLLLDEERGRLLLGAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNKTHIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESGRLKCPFDPQQPFASVMTDEYLYSGTASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTFFIPDTYNPDDDKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNMELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAPTSKRRARRQDVKYGDPITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKWYIQRSGDEHREELKPDERI | chr7(-):84999845,84999865,85006802,85006941,85012782,85012846,85015059,85015216,85018252,85018293,85020233,85020321,85022391,85022613,85036889,85037033,85040673,85040742,85042171,85042285,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85191647,85191788,85224246,85224441,85249853,85249969,85250200,85250255 |
| teRNA_15987.10 | SEMA3D | Chimeric | Non-coding | Non-coding | chr7(-):85050730,85050750,85055717,85055859,85065424,85065552,85068191,85068284,85072962,85073081,85081517,85081579,85097805,85097965,85121741,85121931,85191647,85191788,85224246,85224441,85249853,85249969,85250200,85250255 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
