hAT-N1a_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001245 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 362 |
| Kimura value | 31.23 |
| Tau index | 1.0000 |
| Description | hAT-Tip100 DNA transposon, hAT-N1a_Mam subfamily |
| Comment | Incomplete at 5'end where the consensus runs in a simple repeat. Orientation may be the other way around. |
| Sequence |
GTGTGTGTGTGATGAGGATTAAACNGTACATGGTATCAGGGAAAACTGTCGACATTGATGCTGATTATAGATACTGGAGAACTAACAAAGTAAGAAGAGAAAAACTTAAAAATGCTTGGTTTGGCTGTGTAAAAGTAATACTAATTACAGTCATTTACGTGAACTGCTTACCATTTATGCCTAATTACCATGCAGCACAATAACGATTATGCATATCATTAAATATGTGTCAGATTAACTTTGTTGTAAGTTTTATTTGATTACAACACTAAACTCTGTTCACGTATGCTCAGTCTTCATAGTTTGTTGCTCATGTAGCATGGTCGTCTGCTCACAACTTTAAAAAATTAGAGGGAACATTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-N1a_Mam | HOXD3 | 181 | 188 | + | 13.70 | CTAATTAC |
| hAT-N1a_Mam | ANL2 | 216 | 225 | + | 13.70 | TCATTAAATA |
| hAT-N1a_Mam | ceh-18 | 206 | 213 | - | 13.35 | TGCATAAT |
| hAT-N1a_Mam | GRF6 | 228 | 234 | - | 13.30 | TCTGACA |
| hAT-N1a_Mam | Dmrt1 | 84 | 92 | + | 13.20 | AACAAAGTA |
| hAT-N1a_Mam | unc-86 | 207 | 214 | + | 13.03 | TTATGCAT |
| hAT-N1a_Mam | GRF9 | 228 | 234 | + | 13.03 | TGTCAGA |
| hAT-N1a_Mam | DREB1E | 48 | 55 | - | 13.00 | ATGTCGAC |
| hAT-N1a_Mam | Hmga1 | 106 | 113 | - | 12.99 | ATTTTTAA |
| hAT-N1a_Mam | Ptx1 | 16 | 22 | - | 12.99 | TTAATCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
