hAT-N1a_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001245 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 362 |
| Kimura value | 31.23 |
| Tau index | 1.0000 |
| Description | hAT-Tip100 DNA transposon, hAT-N1a_Mam subfamily |
| Comment | Incomplete at 5'end where the consensus runs in a simple repeat. Orientation may be the other way around. |
| Sequence |
GTGTGTGTGTGATGAGGATTAAACNGTACATGGTATCAGGGAAAACTGTCGACATTGATGCTGATTATAGATACTGGAGAACTAACAAAGTAAGAAGAGAAAAACTTAAAAATGCTTGGTTTGGCTGTGTAAAAGTAATACTAATTACAGTCATTTACGTGAACTGCTTACCATTTATGCCTAATTACCATGCAGCACAATAACGATTATGCATATCATTAAATATGTGTCAGATTAACTTTGTTGTAAGTTTTATTTGATTACAACACTAAACTCTGTTCACGTATGCTCAGTCTTCATAGTTTGTTGCTCATGTAGCATGGTCGTCTGCTCACAACTTTAAAAAATTAGAGGGAACATTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-N1a_Mam | cg | 2 | 12 | - | 16.34 | TCACACACACA |
| hAT-N1a_Mam | PHOX2B | 252 | 263 | - | 14.87 | TAATCAAATAAA |
| hAT-N1a_Mam | HDG7 | 216 | 225 | + | 14.18 | TCATTAAATA |
| hAT-N1a_Mam | ZHD9 | 173 | 187 | + | 14.16 | ATTTATGCCTAATTA |
| hAT-N1a_Mam | unc-86 | 209 | 216 | - | 14.03 | ATATGCAT |
| hAT-N1a_Mam | HDG1 | 216 | 225 | - | 13.90 | TATTTAATGA |
| hAT-N1a_Mam | DOF5.1 | 85 | 103 | + | 13.85 | ACAAAGTAAGAAGAGAAAA |
| hAT-N1a_Mam | fru | 132 | 139 | + | 13.80 | AAAGTAAT |
| hAT-N1a_Mam | CUP9 | 224 | 232 | - | 13.73 | TGACACATA |
| hAT-N1a_Mam | HOXD3 | 141 | 148 | + | 13.70 | CTAATTAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
