hAT-N1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000978 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 340 |
| Kimura value | 32.76 |
| Tau index | 0.9868 |
| Description | Putative hAT-Tip10 DNA transposon, hAT-N1_Mam subfamily |
| Comment | hAT-N1_Mam is classified by 3' end similarities to hAT elements in Fugu and in the flatworm Schmidtea. The 5' end is uncertain, and no TSDs are apparent. |
| Sequence |
CTGGGGATCNGGGGNTCTTCAGAGGAGCCTCAGAGCAGCTTCCTGCTCTGCCCGGTTCCTCCCCCCCTTCCCCCCAGCTGACCCCAGAAATGCTTGGTTTGGCTGTGTAAAAGTAATACTAATTACAGTCATTTACGTGAACTGCTTACCATTTATGCCTAATTACCATGCAGCACAATAACGATTATGCATATCATTAAATATGTGTCAGATTAACTTTGTTGTAAGTTTTATTTGATTACAACACTAAACTCTGTTCACGTATGCTCAGTCTTCATAGTTTGTTGCTCACGTAGCATGGTCGTCTGCTCACAACTTTAAAAAATTAGAGGGAACATTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-N1_Mam | MYB88 | 22 | 30 | - | 12.49 | AGGCTCCTC |
| hAT-N1_Mam | ZHD5 | 119 | 126 | - | 12.45 | GTAATTAG |
| hAT-N1_Mam | ZHD5 | 159 | 166 | - | 12.45 | GTAATTAG |
| hAT-N1_Mam | THRB | 69 | 86 | + | 12.43 | TCCCCCCAGCTGACCCCA |
| hAT-N1_Mam | MZF1 | 2 | 9 | - | 12.33 | GATCCCCA |
| hAT-N1_Mam | POU3F1 | 185 | 194 | + | 12.25 | TTATGCATAT |
| hAT-N1_Mam | Dfd | 194 | 200 | - | 12.20 | TTAATGA |
| hAT-N1_Mam | Antp | 194 | 200 | - | 12.19 | TTAATGA |
| hAT-N1_Mam | RARA::RXRA | 68 | 84 | - | 12.16 | GGGTCAGCTGGGGGGAA |
| hAT-N1_Mam | pdm3 | 119 | 126 | + | 12.15 | CTAATTAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
