hAT-N1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000978 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 340 |
| Kimura value | 32.76 |
| Tau index | 0.9868 |
| Description | Putative hAT-Tip10 DNA transposon, hAT-N1_Mam subfamily |
| Comment | hAT-N1_Mam is classified by 3' end similarities to hAT elements in Fugu and in the flatworm Schmidtea. The 5' end is uncertain, and no TSDs are apparent. |
| Sequence |
CTGGGGATCNGGGGNTCTTCAGAGGAGCCTCAGAGCAGCTTCCTGCTCTGCCCGGTTCCTCCCCCCCTTCCCCCCAGCTGACCCCAGAAATGCTTGGTTTGGCTGTGTAAAAGTAATACTAATTACAGTCATTTACGTGAACTGCTTACCATTTATGCCTAATTACCATGCAGCACAATAACGATTATGCATATCATTAAATATGTGTCAGATTAACTTTGTTGTAAGTTTTATTTGATTACAACACTAAACTCTGTTCACGTATGCTCAGTCTTCATAGTTTGTTGCTCACGTAGCATGGTCGTCTGCTCACAACTTTAAAAAATTAGAGGGAACATTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-N1_Mam | PRDM9 | 56 | 75 | - | 22.14 | GGGGGGAAGGGGGGGAGGAA |
| hAT-N1_Mam | PRDM9 | 55 | 74 | - | 17.95 | GGGGGAAGGGGGGGAGGAAC |
| hAT-N1_Mam | ZNF281 | 65 | 74 | - | 17.12 | GGGGGAAGGG |
| hAT-N1_Mam | PLAG1 | 62 | 75 | - | 16.08 | GGGGGGAAGGGGGG |
| hAT-N1_Mam | PRDM9 | 57 | 76 | - | 15.49 | TGGGGGGAAGGGGGGGAGGA |
| hAT-N1_Mam | RARA::RXRG | 68 | 84 | - | 15.01 | GGGTCAGCTGGGGGGAA |
| hAT-N1_Mam | PHOX2B | 230 | 241 | - | 14.87 | TAATCAAATAAA |
| hAT-N1_Mam | HDG7 | 194 | 203 | + | 14.18 | TCATTAAATA |
| hAT-N1_Mam | ZHD9 | 151 | 165 | + | 14.16 | ATTTATGCCTAATTA |
| hAT-N1_Mam | INSM1 | 79 | 90 | - | 14.07 | TTTCTGGGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
