hAT-N1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000978 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 340 |
| Kimura value | 32.76 |
| Tau index | 0.9868 |
| Description | Putative hAT-Tip10 DNA transposon, hAT-N1_Mam subfamily |
| Comment | hAT-N1_Mam is classified by 3' end similarities to hAT elements in Fugu and in the flatworm Schmidtea. The 5' end is uncertain, and no TSDs are apparent. |
| Sequence |
CTGGGGATCNGGGGNTCTTCAGAGGAGCCTCAGAGCAGCTTCCTGCTCTGCCCGGTTCCTCCCCCCCTTCCCCCCAGCTGACCCCAGAAATGCTTGGTTTGGCTGTGTAAAAGTAATACTAATTACAGTCATTTACGTGAACTGCTTACCATTTATGCCTAATTACCATGCAGCACAATAACGATTATGCATATCATTAAATATGTGTCAGATTAACTTTGTTGTAAGTTTTATTTGATTACAACACTAAACTCTGTTCACGTATGCTCAGTCTTCATAGTTTGTTGCTCACGTAGCATGGTCGTCTGCTCACAACTTTAAAAAATTAGAGGGAACATTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-N1_Mam | unc-86 | 187 | 194 | - | 14.03 | ATATGCAT |
| hAT-N1_Mam | HDG1 | 194 | 203 | - | 13.90 | TATTTAATGA |
| hAT-N1_Mam | ZNF263 | 57 | 63 | - | 13.83 | GGGAGGA |
| hAT-N1_Mam | fru | 110 | 117 | + | 13.80 | AAAGTAAT |
| hAT-N1_Mam | l(3)neo38 | 61 | 67 | + | 13.75 | CCCCCCC |
| hAT-N1_Mam | CUP9 | 202 | 210 | - | 13.73 | TGACACATA |
| hAT-N1_Mam | Klf15 | 52 | 73 | + | 13.72 | CCGGTTCCTCCCCCCCTTCCCC |
| hAT-N1_Mam | HOXD3 | 119 | 126 | + | 13.70 | CTAATTAC |
| hAT-N1_Mam | HOXD3 | 159 | 166 | + | 13.70 | CTAATTAC |
| hAT-N1_Mam | ANL2 | 194 | 203 | + | 13.70 | TCATTAAATA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
