hAT-5_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001335 |
|---|---|
| TE superfamily | Tag1 |
| TE class | DNA |
| Species | Mammalia |
| Length | 3540 |
| Kimura value | 32.08 |
| Tau index | 0.9753 |
| Description | hAT-Tip100 DNA transposon, hAT-5_Mam subfamily |
| Comment | - |
| Sequence |
CAGGGTAGATAAAAATCNATNATTTTTNAAAAAAAAATTAAAAATCGGATTTTTTAATTTAATCGGATTTTNTANTTTTTNTNGTTAAGATGTTTTNTTAAGAAAAAGAAACCTATATAAAGATAGTTTTAATTTAAGATATGTTAAAGCTCAAAGATATCATCATGGAATAGGGATTATAACTTCTAATTATATANTATTTGAGACAATATATTCATGTAACCTTTTTAGAAAAGTTTTATAAATAGGTCACAACAGGCCACGGACTATATTAGGGGCCCAATCTTATGGGGTTCCCAGAGGCTCCTCTATAGATTANTNAGAAAGATTAAAGAAAACCACTCTACCCAATGGGACTCAGTGCTCAGTCGATCTAGAAGATCCCATTAAGCATCTCTGTGATGCTTAGTTTCAGTTCTCAAACTGTGGATTTGTGTCTCCAGAGATAACATCCTTGTTAACAGCAGTATATGGAGATGAGAGATAACAGACCTGATCAGCCCTATTGTCTCTCTGCAAGTTTGTGTACACAGAGTCAAGCCCTTACCTCTCTCTAAAAGTGCAAAGTTTCAAGAAGTTAAATGAATAGAGGATTGTTGGGGGTGGAGTAGATCTGGGCAAGGAGGAGGAGTCTGGAGATAAATGCAAGGAGGGAGGGGCAGTAGAAACAAAAGAGAAACATTTTCGAGCAGAATATTCCAGAAGTCTTGAGGGATAAGTTTCTGAGTATAGCTTCCATTGATTTGAGATCTAGTGAGGGAATGGTATGGTAGAAGGGAAAACCTATCATGGCAGCAGGCCGTAAAAGAGACCCGTTTGGGAATATTTTAATGAAGTTCCTCTNCCTGTGGGTAAGATAGGCATGCGTGCAAAATGCAAACAGTGCAACAAAGAAATGCAAGGCCTGGTTGCCCGAATGAAACAGCATCGTGAGAAGTGCTCCTTCTCAGGAGGAAGCTGCTTTGAAGATGATGAATGGAACATGTCTGAACATGCGGNATNTCTAGGTTAGTAAACTTTCTTATTNCATTCTTTTTACTCAAGGACTGCCTGNCTTCTCTGTTGACATCTTTTGGACGGANTNCTAGATTACTTGAATTCTCATAAAAATGTTTGAGNAAAAGCATANNTGTTATTTTAAGGANCTATCATATTCNNAATGTNATNGTGANNTGAAANGATGACTGAAATAAGCAGACCTTCCTTTTGCAGTTTCACTTCNAAAGTAGTNCTGGNCNCNATGAGCNANNCTAAATGNNCAGTNNNNTAGCGACTNCATTAACTNCTTTTGTTCAGGAGGATCNANCCTGAACATACAGGATTCTGACTGTTCATCTTCAGCATTATCACTGTCCACAGTNTCGAANNTATCTGCTAACGATACNAGTGTTCGAATCNAATGCAAATCGCATATTATACCNCCTGGGGNNNGNTGGGATTGAAATCTCCGTTATCCAGAAACTACCATAGATAAGTTTGCAATAAGAGCCAGCAGATTNCAGCGAGNGGTAATTGATGAAAAAATTGCTCGGTTTGTTTATGCAACAAACTCTCCTTTCCGTATGGTTGAGAACACACGCTTCACTGACGTGGTTCAGTCATTGCGATCAGGATACAGTCCACCCGACAGAGCAGATATAGCAGGCAAATTGCTGGANAAAGTGTAAGAGNAAGAAATTNAACGGGGTNCANAANGCCTAGAGGGAAAAATTGTGAACCTGAGGCNNGATAGGTGGAGCAATGNCCGCAGTGGTCCAATAATATGNGCTTGTGTGACAACAGAANAAGGGNCTNTCTNCCTTNCAGAAACAATCGATACATCAGGAAATGCACGCANAGCAGAATATTTNCAAGAAATAGCAGTAAAAGCTGTAACAAACTGCGAAAAAAAATTCAGATGTCTANTACGCAGCTTCGTCACAGACAACGCTGCAAATGTATCAAAGGTNAGAAGAAATCTAGAANAAAGTGAAGAAAGCCCCAAGCTAATAACATATGGCTGCAGCGCTCATTTGATGCACCTCTTAGCCAAAGACTTCGGTGCTCCAGAAATAAAGGCTAATGTTGCNGAAATTGCAAAATACTTCCATAACAACCANTTTGCAGCAGCTGCTCCGAAGAAAGCAGGAGGAACCAAACTAACTCTCCCACAAGACGTGCGATGGAACTCAGTAGCGGATTGTTTTGNGTGATATATTGAGAACTGGCCTAATCTGACGACAATTTGTGAACAAAATCGTGACAAAATAGATGGAACTGTCACAGCCAAAGTTTNCAANATTGGGCTAAAGAGAAATGTAGAACGTGTGCTGACTATCCCGAAGCCTATTTCCGTAGCCTTGAACAAAGTGCAGGGAAATCGCCGTTTTATTGCTGATGCTGTTGAAATTTGGAAGGNACTGAGTGAGACCTTGAAAAGAGAAATGTNCAATGACAGAGTNAAATTACGGGCATTAAAAAAACGAACGGATCAAGCGCTATNTCCAGCTCATTTTCTTGCCAATATTCTCAATACTCGGTACCAGGGTCAATCCTTAACCGCTGAAGAAGAGTTGGCTATGACATGGGCATCCAGCAATCATCCCTCCATAATACCAACTATAATAAATTTCAGGGCTAAGGGCGAACCATTCAAGAAATATATGTTTGCTGATGAGGCTTTAAAGAAAGTCACGCNAGTGAACTGGTGGAAGTCACTTAAGCACCTGGATCCATCANAGACTACTGAAGTGATAATCCAGCTTTTAACAGCAGTAGCTTCTTCTGCAGGCGTAGAAAGAATATTTTCTTCCTTTGGACTAATTCATTCTAAATTGAGAAATCGCTTGGGAACTGAAAAAGCAGGAAAGCTTGTCTTTCTTTTCCAGTCTATGAATAAACAGGAAGAGGAAGGTGAAGACTGAATTNGCTGCGTAACCCAGTATTTTAAGTTTCTCATGTTGACNTGGCTGAAATAATCTATTTAATTTTTGTNAAAANACACATTTCGCGTTTATAANTAAAATNGTTAAAAATTCAAAAATACACGTGCTTGTTTTGTTAAAATAATTATACACGTTTGTTGTTGAAGAAAAATATCCAAAATACATAAGCTTGTTGTTTTAGTTAAATAAAATAATTTAAATGTCTGTTGCCTTTGGTGACGGTTGTTGTCCTCCNAATACAGNATGGCAAAAATATCCCCCAAATATCCATGATTAATCNANTGAATTGGAGATAGTTCACCTCCCAATGACTTCACAAGTATCTGCTTCAATTAGCTTTGGTAAATAAAATAACCAAATCATAATTCAGTTTTCTGATGTAGCTGCAAAATTAATCTGAAAAAATATCAAAATAAATCACTGCTTTAAAATGTATAGTGTGTACCTTCTAAAAATGAAACCTACATCTATCTCTGAGTTGTGAATAATATGTATTAAGGTTATATCAAACAACAAGAATGCACTTTTTGTAGAAAACAATGATTAAATCGAGGCTTCCTGACCAGTGATTTAAATCGTGATTTAAATCGATTTGATTTAAATCAAATCCACCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-5_Mam | sc | 2105 | 2114 | - | 16.80 | AGCAGCTGCT |
| hAT-5_Mam | PHL4 | 691 | 700 | + | 16.80 | AGAATATTCC |
| hAT-5_Mam | TCX6 | 3007 | 3021 | - | 16.51 | TTTTGAATTTTTAAC |
| hAT-5_Mam | Nr1h3::Rxra | 247 | 262 | - | 16.37 | TGGCCTGTTGTGACCT |
| hAT-5_Mam | GFI1 | 3339 | 3349 | + | 16.36 | AAATCACTGCT |
| hAT-5_Mam | TCX3 | 3012 | 3023 | + | 16.33 | AAATTCAAAAAT |
| hAT-5_Mam | TCX2 | 3007 | 3021 | + | 16.31 | GTTAAAAATTCAAAA |
| hAT-5_Mam | sens | 3339 | 3348 | + | 16.25 | AAATCACTGC |
| hAT-5_Mam | HSFA1E | 691 | 704 | + | 16.16 | AGAATATTCCAGAA |
| hAT-5_Mam | STAT1::STAT2 | 101 | 113 | - | 16.14 | GGTTTCTTTTTCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
