hAT-5_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001335 |
|---|---|
| TE superfamily | Tag1 |
| TE class | DNA |
| Species | Mammalia |
| Length | 3540 |
| Kimura value | 32.08 |
| Tau index | 0.9753 |
| Description | hAT-Tip100 DNA transposon, hAT-5_Mam subfamily |
| Comment | - |
| Sequence |
CAGGGTAGATAAAAATCNATNATTTTTNAAAAAAAAATTAAAAATCGGATTTTTTAATTTAATCGGATTTTNTANTTTTTNTNGTTAAGATGTTTTNTTAAGAAAAAGAAACCTATATAAAGATAGTTTTAATTTAAGATATGTTAAAGCTCAAAGATATCATCATGGAATAGGGATTATAACTTCTAATTATATANTATTTGAGACAATATATTCATGTAACCTTTTTAGAAAAGTTTTATAAATAGGTCACAACAGGCCACGGACTATATTAGGGGCCCAATCTTATGGGGTTCCCAGAGGCTCCTCTATAGATTANTNAGAAAGATTAAAGAAAACCACTCTACCCAATGGGACTCAGTGCTCAGTCGATCTAGAAGATCCCATTAAGCATCTCTGTGATGCTTAGTTTCAGTTCTCAAACTGTGGATTTGTGTCTCCAGAGATAACATCCTTGTTAACAGCAGTATATGGAGATGAGAGATAACAGACCTGATCAGCCCTATTGTCTCTCTGCAAGTTTGTGTACACAGAGTCAAGCCCTTACCTCTCTCTAAAAGTGCAAAGTTTCAAGAAGTTAAATGAATAGAGGATTGTTGGGGGTGGAGTAGATCTGGGCAAGGAGGAGGAGTCTGGAGATAAATGCAAGGAGGGAGGGGCAGTAGAAACAAAAGAGAAACATTTTCGAGCAGAATATTCCAGAAGTCTTGAGGGATAAGTTTCTGAGTATAGCTTCCATTGATTTGAGATCTAGTGAGGGAATGGTATGGTAGAAGGGAAAACCTATCATGGCAGCAGGCCGTAAAAGAGACCCGTTTGGGAATATTTTAATGAAGTTCCTCTNCCTGTGGGTAAGATAGGCATGCGTGCAAAATGCAAACAGTGCAACAAAGAAATGCAAGGCCTGGTTGCCCGAATGAAACAGCATCGTGAGAAGTGCTCCTTCTCAGGAGGAAGCTGCTTTGAAGATGATGAATGGAACATGTCTGAACATGCGGNATNTCTAGGTTAGTAAACTTTCTTATTNCATTCTTTTTACTCAAGGACTGCCTGNCTTCTCTGTTGACATCTTTTGGACGGANTNCTAGATTACTTGAATTCTCATAAAAATGTTTGAGNAAAAGCATANNTGTTATTTTAAGGANCTATCATATTCNNAATGTNATNGTGANNTGAAANGATGACTGAAATAAGCAGACCTTCCTTTTGCAGTTTCACTTCNAAAGTAGTNCTGGNCNCNATGAGCNANNCTAAATGNNCAGTNNNNTAGCGACTNCATTAACTNCTTTTGTTCAGGAGGATCNANCCTGAACATACAGGATTCTGACTGTTCATCTTCAGCATTATCACTGTCCACAGTNTCGAANNTATCTGCTAACGATACNAGTGTTCGAATCNAATGCAAATCGCATATTATACCNCCTGGGGNNNGNTGGGATTGAAATCTCCGTTATCCAGAAACTACCATAGATAAGTTTGCAATAAGAGCCAGCAGATTNCAGCGAGNGGTAATTGATGAAAAAATTGCTCGGTTTGTTTATGCAACAAACTCTCCTTTCCGTATGGTTGAGAACACACGCTTCACTGACGTGGTTCAGTCATTGCGATCAGGATACAGTCCACCCGACAGAGCAGATATAGCAGGCAAATTGCTGGANAAAGTGTAAGAGNAAGAAATTNAACGGGGTNCANAANGCCTAGAGGGAAAAATTGTGAACCTGAGGCNNGATAGGTGGAGCAATGNCCGCAGTGGTCCAATAATATGNGCTTGTGTGACAACAGAANAAGGGNCTNTCTNCCTTNCAGAAACAATCGATACATCAGGAAATGCACGCANAGCAGAATATTTNCAAGAAATAGCAGTAAAAGCTGTAACAAACTGCGAAAAAAAATTCAGATGTCTANTACGCAGCTTCGTCACAGACAACGCTGCAAATGTATCAAAGGTNAGAAGAAATCTAGAANAAAGTGAAGAAAGCCCCAAGCTAATAACATATGGCTGCAGCGCTCATTTGATGCACCTCTTAGCCAAAGACTTCGGTGCTCCAGAAATAAAGGCTAATGTTGCNGAAATTGCAAAATACTTCCATAACAACCANTTTGCAGCAGCTGCTCCGAAGAAAGCAGGAGGAACCAAACTAACTCTCCCACAAGACGTGCGATGGAACTCAGTAGCGGATTGTTTTGNGTGATATATTGAGAACTGGCCTAATCTGACGACAATTTGTGAACAAAATCGTGACAAAATAGATGGAACTGTCACAGCCAAAGTTTNCAANATTGGGCTAAAGAGAAATGTAGAACGTGTGCTGACTATCCCGAAGCCTATTTCCGTAGCCTTGAACAAAGTGCAGGGAAATCGCCGTTTTATTGCTGATGCTGTTGAAATTTGGAAGGNACTGAGTGAGACCTTGAAAAGAGAAATGTNCAATGACAGAGTNAAATTACGGGCATTAAAAAAACGAACGGATCAAGCGCTATNTCCAGCTCATTTTCTTGCCAATATTCTCAATACTCGGTACCAGGGTCAATCCTTAACCGCTGAAGAAGAGTTGGCTATGACATGGGCATCCAGCAATCATCCCTCCATAATACCAACTATAATAAATTTCAGGGCTAAGGGCGAACCATTCAAGAAATATATGTTTGCTGATGAGGCTTTAAAGAAAGTCACGCNAGTGAACTGGTGGAAGTCACTTAAGCACCTGGATCCATCANAGACTACTGAAGTGATAATCCAGCTTTTAACAGCAGTAGCTTCTTCTGCAGGCGTAGAAAGAATATTTTCTTCCTTTGGACTAATTCATTCTAAATTGAGAAATCGCTTGGGAACTGAAAAAGCAGGAAAGCTTGTCTTTCTTTTCCAGTCTATGAATAAACAGGAAGAGGAAGGTGAAGACTGAATTNGCTGCGTAACCCAGTATTTTAAGTTTCTCATGTTGACNTGGCTGAAATAATCTATTTAATTTTTGTNAAAANACACATTTCGCGTTTATAANTAAAATNGTTAAAAATTCAAAAATACACGTGCTTGTTTTGTTAAAATAATTATACACGTTTGTTGTTGAAGAAAAATATCCAAAATACATAAGCTTGTTGTTTTAGTTAAATAAAATAATTTAAATGTCTGTTGCCTTTGGTGACGGTTGTTGTCCTCCNAATACAGNATGGCAAAAATATCCCCCAAATATCCATGATTAATCNANTGAATTGGAGATAGTTCACCTCCCAATGACTTCACAAGTATCTGCTTCAATTAGCTTTGGTAAATAAAATAACCAAATCATAATTCAGTTTTCTGATGTAGCTGCAAAATTAATCTGAAAAAATATCAAAATAAATCACTGCTTTAAAATGTATAGTGTGTACCTTCTAAAAATGAAACCTACATCTATCTCTGAGTTGTGAATAATATGTATTAAGGTTATATCAAACAACAAGAATGCACTTTTTGTAGAAAACAATGATTAAATCGAGGCTTCCTGACCAGTGATTTAAATCGTGATTTAAATCGATTTGATTTAAATCAAATCCACCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| hAT-5_Mam | BPC5 | 2875 | 2904 | + | -42.89 | ATAAACAGGAAGAGGAAGGTGAAGACTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
