Zaphod
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001123 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 4079 |
| Kimura value | 23.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod subfamily |
| Comment | ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCATATCACAAACACACAAAAAATAAATTTATTAAAGAACACATGGGCGCCTCTGTCACTCGGGATCCGGCGCTCAGCGCTGGCACAGCGCGACCCGTAACCCTAAACATCCGCTCTCGTGACTAACACCGTTCAGGCCCCAGGGAAACGCTTCTCCACATCTCTTGCCCTATGTCCTCGAAACAAAAGGCGACTGCGTCCGAATGCCGTGAAGGTTTGTGGGTTGTGCCGCTGCCGACGTCGGAGACGGACACTGCTTCGGAGTGCGGGGAGGATTTGAGCGGCGGAAGCGCTTAGGTAAGAGAAAAGACAAATTAATTAACTTGTCAAATCCTTCCTCTCAGATAGCATGAATGCAATAGATTCTTGCATAACGAAGTATCGTTTCCCAGTAGTGCCGAGCGTCCATTTTCTTGCTTCTCTTCGTGTTCCAATTCGTGGTTCCGGAGGTACTCACGAATTAGCGCGGTATTCGCAACAGTTGCACATGGCGGCTGAGGAACATTTTGCAATATTAAACAATTCATATTACTCTTAAATTTGTATATATGTAGGTCTAGACGTAACATGCGTGAAGCGTGATACCGATTCTTTACATTGGCAACTAGATGGACATTGAACGCTAGAATTGCGAATAGTTTTATTTTTATAAAAATATTTAATAAGATTTAATTAAATTTTCAAAAAATTAAATAAAAATTTCAGCTTTATTTAAATAATTTTGATTTAAAATTTTGATATTCATTAATTATAATTTGTATTTTGCCTTTTAATTTTAATAGATAATTTTGAATATTTTAGAAGAAAAATAACTTTTGAAAACATATGAAAATATTTTAATTTTTACATTTACTTTAATTTACATTTTTGATGAAAATATATTCAAATTTTGTACACTTTGAATACAATTACATTTTATTTTTTAATCCTTTAGATCATTGAGAATGAGTACAAGTCGAGATCGTGATAGAAATAGAAAATATAAAAGTGGAGCTCAGAAAAGAAAAAAAGCTGAAAAGAAAAAAGAAATAGAAAATCTTCAAAGAGGCGGTCTGCTTAAATTTTTAAAAACTGGAAACAATGAAAGTGAGCAGACTTCTGTCGAGCATGACCCACATAAAATTCGCGAACAGGACATTACAAATTCTTTATTTAATGAAGATTTAATTACTGATCAAAACAATGAAAATGAGCAAGAAAATTATTCTCATCAAATCCACAACTCGAACAGGTCAGATGAAATCCCTGCAACTTCATATTCTTTACTAAATGAAGATTTAATTACTGATCAAAACAATGAGAATGAAAAAGAGAATTATTCATATCAAATTCACAACTCAGAAGCAACAAATGCAACTCTGGCCTGCCCATTAGAAGATGAAGAAAATTACATTCATGAAATCGGCAAATTGGACGAGAAAGACGAAACCTCCGGAGCTTTACTATGTTTATTGGATGATGATCCTGGAAAACGGCCGTCACGTCCTTCTGACAGCGTGAGAATGTTTCTAGCAAAACACAATCTGATTCAAATTAATGATTACGATTTTCCATTGGATGAACATGGCAGAAAATTTAGTATTTCATTTTACACCAAAATTCTTTCAAATGGAGAAAGAAACTGTAGAAANTGGCTTTTATATTCTAAGTTCAAAGACAAAGTATTTTGTTACTACTGTTACATGTTTCACAACCAATCTTCAAGATCAGCTTTGGCCAATGAAGGTATTTGTGACTGGAAACACTTAGGTTCTCGATTAAAAGAACACGAAACGTCACTTGCACACAAAAAAGCACACATGCAATTACTAGAACTGAAAAAAAGGCTGAATAAACAGCAAACAATCGATAGTATTCAACAAAGACAAGTAAACGCCGATATAGAACATTGGCGTGATGTTCTTAAAAGAATAATATTATGTGTCCAATATTTAGCCAAGCATAATGATGCTTTTCGTGGCACTAACAGCACAATATTTACAGAAAACAATGGAAAATTTCTAGGTTTAGTAGAAATGATTTCGAAATTTGATGCTAGAATGGCCGAACATGTAAGACGGATAAAAAATAATGAAACAAATGATCACTATCTAGGATGGAGAATTCAAAATGAGATTATTAATTTAATGGGTAATAAAGTGAGAGAAGAAATCATACATAANAATTTAAAAAGTAAATATTACTCAGTTCAACTAGATTGTANCAGGGACAAAAGTCACGTTGAACAACTAACATTTATTATACGTATTGTTGAACTACCAGAAGAAGAAAACAAGAAAGTCGAAATTAATGAGTATTTCATTGGTTTTACACCTGTTGTAAAAAGTACAGGTTTTGACTTAAGTGAAGAACTGAAAAAACAACTTTCAATTTTAGGCATTGATTTAAAAGATTGTCGAGGGCAAGCCTATGATAATGGCGCTAACATGGTTGGTAAAGAAAAAGGTGTACAAGCCAGAATTTTGGCCGAAAATCCAGAAGCATTCTTTGTGCCATGTACGGCGCATAGTTTGAATTTGTTACTAGGAGACGTGGCCTCAACTGTGCCAATAGCGATGACATTCTTTGGAACAATTCAAAGATTATATACGATATTTTCTGGATCTGCCCAAAGATGGAACATCTTGATGAAACACATATCAAATTTGACCTTACAACCACTCTCGGACACACGATGGGAATGCCGACTAAATGCTGTTAAAGCAATTAGATTTAATTTAGACAAGATACGAGATGCACTAGAAGAGTTAAGCGAAACAACAGAAGATCCTCAAATAAAGAGCGAATCGTGGTCTTTGGCGGAAAATGAAATTAATTTTGAATTTGCGCTATCCACAGTTATTTGGTATGAACTGTTGCTTGCTATTAATAATGTTAGCAAAAGCTTACAAAAAANCAACAGATCTAAGTTTGGCTATTTCACTTTTAAAAGGATTAAAAATATTTTTTNAAATTTTAGAGAAAATGGTTTTTCTAAATCGAAAGAAACTGCATGTGAAATATGCAACAAAAGTGACATTCCAATAAAATATAAGGAAATTAGAACAAGGAAACGAAAACGTTTGCATGACTATGAAGGAGAAGATTCACGTACAAATAATCCCGAAACTAATTTCTATAGAGACTATTTTCTGGCCATTATAGATCAAGGTATAGTCTCGATTGAAGAGAGATTTGAACAAATTGAGCAACATACTGCTATTTTCGGTTTTCTTTATAATATCCCAGCATTGAAAAATTTGAAAGAAGAAGAACTTAAGAAATACTGTATGGATCTAGATATTGCTTTAAGAGACGGTGAAAATCGCGATATAAGTGATAGCGATTTATATGATGAAATTAAAATATTTTGTAATATTTTCTGCGATAATGATAATTTATCATATGCGACCCCATTACAATGTTTGAACATGATATGTAAAATTCATGGTTCATTTCCGAATCTAAGTATTGCTTTAAGAATTTTATTGACAATTCCAGTTGCTACTGCCTCAGCAGAGCGAAGTTTCTCCAAATTGAAATTAATAAAAAACTATCTAAGAACTACAATGACTCAAGAAAGGTTGTCTAATTTGGCATTACTGTCAATAGAACACAAATTATGTGAAAATCTTGATTATAACAACATAATTAGTGATTTTGCTGAAATGAAGGCAAGAAAAATAAATTTTATGGAATAAATATATAATAATTTATGAATTATGTATGTCTTTATTTTATTACTCATCCAAACATCGCCGGCCCATCAACAGAACACCCAGACATGCGCAATAATAATTAAATTCAGTCGTCTTTGATATTTTGCCGACTTTCAGTCATATAAAAACCATAGCTTTACACATATTTTTCAATTTTGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod | CDC5 | 137 | 145 | + | 16.20 | GCTCAGCGC |
| Zaphod | TCX6 | 3999 | 4013 | + | 16.16 | TTTTAAATATTTAGA |
| Zaphod | lin-54 | 2880 | 2892 | - | 16.02 | GCAAATTCAAAAT |
| Zaphod | CDF5 | 1360 | 1380 | - | 16.02 | TTCTCTTTTTCATTCTCATTG |
| Zaphod | D | 2049 | 2059 | - | 15.86 | TCCATTGTTTT |
| Zaphod | IDD5 | 3917 | 3930 | + | 15.79 | TTTTGTCGTTATGA |
| Zaphod | IDD7 | 3917 | 3930 | - | 15.79 | TCATAACGACAAAA |
| Zaphod | AIL7 | 124 | 134 | - | 15.77 | CGGATCCCGAG |
| Zaphod | RORA | 1174 | 1184 | - | 15.76 | TATGTGGGTCA |
| Zaphod | NFYB | 1780 | 1788 | - | 15.74 | TCATTGGCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
