Zaphod
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001123 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 4079 |
| Kimura value | 23.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod subfamily |
| Comment | ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCATATCACAAACACACAAAAAATAAATTTATTAAAGAACACATGGGCGCCTCTGTCACTCGGGATCCGGCGCTCAGCGCTGGCACAGCGCGACCCGTAACCCTAAACATCCGCTCTCGTGACTAACACCGTTCAGGCCCCAGGGAAACGCTTCTCCACATCTCTTGCCCTATGTCCTCGAAACAAAAGGCGACTGCGTCCGAATGCCGTGAAGGTTTGTGGGTTGTGCCGCTGCCGACGTCGGAGACGGACACTGCTTCGGAGTGCGGGGAGGATTTGAGCGGCGGAAGCGCTTAGGTAAGAGAAAAGACAAATTAATTAACTTGTCAAATCCTTCCTCTCAGATAGCATGAATGCAATAGATTCTTGCATAACGAAGTATCGTTTCCCAGTAGTGCCGAGCGTCCATTTTCTTGCTTCTCTTCGTGTTCCAATTCGTGGTTCCGGAGGTACTCACGAATTAGCGCGGTATTCGCAACAGTTGCACATGGCGGCTGAGGAACATTTTGCAATATTAAACAATTCATATTACTCTTAAATTTGTATATATGTAGGTCTAGACGTAACATGCGTGAAGCGTGATACCGATTCTTTACATTGGCAACTAGATGGACATTGAACGCTAGAATTGCGAATAGTTTTATTTTTATAAAAATATTTAATAAGATTTAATTAAATTTTCAAAAAATTAAATAAAAATTTCAGCTTTATTTAAATAATTTTGATTTAAAATTTTGATATTCATTAATTATAATTTGTATTTTGCCTTTTAATTTTAATAGATAATTTTGAATATTTTAGAAGAAAAATAACTTTTGAAAACATATGAAAATATTTTAATTTTTACATTTACTTTAATTTACATTTTTGATGAAAATATATTCAAATTTTGTACACTTTGAATACAATTACATTTTATTTTTTAATCCTTTAGATCATTGAGAATGAGTACAAGTCGAGATCGTGATAGAAATAGAAAATATAAAAGTGGAGCTCAGAAAAGAAAAAAAGCTGAAAAGAAAAAAGAAATAGAAAATCTTCAAAGAGGCGGTCTGCTTAAATTTTTAAAAACTGGAAACAATGAAAGTGAGCAGACTTCTGTCGAGCATGACCCACATAAAATTCGCGAACAGGACATTACAAATTCTTTATTTAATGAAGATTTAATTACTGATCAAAACAATGAAAATGAGCAAGAAAATTATTCTCATCAAATCCACAACTCGAACAGGTCAGATGAAATCCCTGCAACTTCATATTCTTTACTAAATGAAGATTTAATTACTGATCAAAACAATGAGAATGAAAAAGAGAATTATTCATATCAAATTCACAACTCAGAAGCAACAAATGCAACTCTGGCCTGCCCATTAGAAGATGAAGAAAATTACATTCATGAAATCGGCAAATTGGACGAGAAAGACGAAACCTCCGGAGCTTTACTATGTTTATTGGATGATGATCCTGGAAAACGGCCGTCACGTCCTTCTGACAGCGTGAGAATGTTTCTAGCAAAACACAATCTGATTCAAATTAATGATTACGATTTTCCATTGGATGAACATGGCAGAAAATTTAGTATTTCATTTTACACCAAAATTCTTTCAAATGGAGAAAGAAACTGTAGAAANTGGCTTTTATATTCTAAGTTCAAAGACAAAGTATTTTGTTACTACTGTTACATGTTTCACAACCAATCTTCAAGATCAGCTTTGGCCAATGAAGGTATTTGTGACTGGAAACACTTAGGTTCTCGATTAAAAGAACACGAAACGTCACTTGCACACAAAAAAGCACACATGCAATTACTAGAACTGAAAAAAAGGCTGAATAAACAGCAAACAATCGATAGTATTCAACAAAGACAAGTAAACGCCGATATAGAACATTGGCGTGATGTTCTTAAAAGAATAATATTATGTGTCCAATATTTAGCCAAGCATAATGATGCTTTTCGTGGCACTAACAGCACAATATTTACAGAAAACAATGGAAAATTTCTAGGTTTAGTAGAAATGATTTCGAAATTTGATGCTAGAATGGCCGAACATGTAAGACGGATAAAAAATAATGAAACAAATGATCACTATCTAGGATGGAGAATTCAAAATGAGATTATTAATTTAATGGGTAATAAAGTGAGAGAAGAAATCATACATAANAATTTAAAAAGTAAATATTACTCAGTTCAACTAGATTGTANCAGGGACAAAAGTCACGTTGAACAACTAACATTTATTATACGTATTGTTGAACTACCAGAAGAAGAAAACAAGAAAGTCGAAATTAATGAGTATTTCATTGGTTTTACACCTGTTGTAAAAAGTACAGGTTTTGACTTAAGTGAAGAACTGAAAAAACAACTTTCAATTTTAGGCATTGATTTAAAAGATTGTCGAGGGCAAGCCTATGATAATGGCGCTAACATGGTTGGTAAAGAAAAAGGTGTACAAGCCAGAATTTTGGCCGAAAATCCAGAAGCATTCTTTGTGCCATGTACGGCGCATAGTTTGAATTTGTTACTAGGAGACGTGGCCTCAACTGTGCCAATAGCGATGACATTCTTTGGAACAATTCAAAGATTATATACGATATTTTCTGGATCTGCCCAAAGATGGAACATCTTGATGAAACACATATCAAATTTGACCTTACAACCACTCTCGGACACACGATGGGAATGCCGACTAAATGCTGTTAAAGCAATTAGATTTAATTTAGACAAGATACGAGATGCACTAGAAGAGTTAAGCGAAACAACAGAAGATCCTCAAATAAAGAGCGAATCGTGGTCTTTGGCGGAAAATGAAATTAATTTTGAATTTGCGCTATCCACAGTTATTTGGTATGAACTGTTGCTTGCTATTAATAATGTTAGCAAAAGCTTACAAAAAANCAACAGATCTAAGTTTGGCTATTTCACTTTTAAAAGGATTAAAAATATTTTTTNAAATTTTAGAGAAAATGGTTTTTCTAAATCGAAAGAAACTGCATGTGAAATATGCAACAAAAGTGACATTCCAATAAAATATAAGGAAATTAGAACAAGGAAACGAAAACGTTTGCATGACTATGAAGGAGAAGATTCACGTACAAATAATCCCGAAACTAATTTCTATAGAGACTATTTTCTGGCCATTATAGATCAAGGTATAGTCTCGATTGAAGAGAGATTTGAACAAATTGAGCAACATACTGCTATTTTCGGTTTTCTTTATAATATCCCAGCATTGAAAAATTTGAAAGAAGAAGAACTTAAGAAATACTGTATGGATCTAGATATTGCTTTAAGAGACGGTGAAAATCGCGATATAAGTGATAGCGATTTATATGATGAAATTAAAATATTTTGTAATATTTTCTGCGATAATGATAATTTATCATATGCGACCCCATTACAATGTTTGAACATGATATGTAAAATTCATGGTTCATTTCCGAATCTAAGTATTGCTTTAAGAATTTTATTGACAATTCCAGTTGCTACTGCCTCAGCAGAGCGAAGTTTCTCCAAATTGAAATTAATAAAAAACTATCTAAGAACTACAATGACTCAAGAAAGGTTGTCTAATTTGGCATTACTGTCAATAGAACACAAATTATGTGAAAATCTTGATTATAACAACATAATTAGTGATTTTGCTGAAATGAAGGCAAGAAAAATAAATTTTATGGAATAAATATATAATAATTTATGAATTATGTATGTCTTTATTTTATTACTCATCCAAACATCGCCGGCCCATCAACAGAACACCCAGACATGCGCAATAATAATTAAATTCAGTCGTCTTTGATATTTTGCCGACTTTCAGTCATATAAAAACCATAGCTTTACACATATTTTTCAATTTTGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod | DOF5.1 | 1071 | 1089 | + | 19.48 | AAAAAGCTGAAAAGAAAAA |
| Zaphod | DOF5.8 | 1071 | 1089 | - | 19.20 | TTTTTCTTTTCAGCTTTTT |
| Zaphod | BAD1 | 4048 | 4059 | + | 18.56 | CCCGGGCCCCGC |
| Zaphod | IDD1 | 3917 | 3928 | + | 18.20 | TTTTGTCGTTAT |
| Zaphod | RAP1 | 3819 | 3830 | - | 18.06 | ATGTCTGGGTGT |
| Zaphod | DOF3.6 | 1068 | 1088 | - | 17.92 | TTTTCTTTTCAGCTTTTTTTC |
| Zaphod | EREB138 | 553 | 562 | - | 17.89 | CAGCCGCCAT |
| Zaphod | MGP | 3916 | 3928 | - | 17.86 | ATAACGACAAAAT |
| Zaphod | ZNF93 | 294 | 307 | - | 17.85 | GACGTCGGCAGCGG |
| Zaphod | IDD11 | 3917 | 3928 | - | 17.80 | ATAACGACAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
