Zaphod
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001123 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 4079 |
| Kimura value | 23.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod subfamily |
| Comment | ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCATATCACAAACACACAAAAAATAAATTTATTAAAGAACACATGGGCGCCTCTGTCACTCGGGATCCGGCGCTCAGCGCTGGCACAGCGCGACCCGTAACCCTAAACATCCGCTCTCGTGACTAACACCGTTCAGGCCCCAGGGAAACGCTTCTCCACATCTCTTGCCCTATGTCCTCGAAACAAAAGGCGACTGCGTCCGAATGCCGTGAAGGTTTGTGGGTTGTGCCGCTGCCGACGTCGGAGACGGACACTGCTTCGGAGTGCGGGGAGGATTTGAGCGGCGGAAGCGCTTAGGTAAGAGAAAAGACAAATTAATTAACTTGTCAAATCCTTCCTCTCAGATAGCATGAATGCAATAGATTCTTGCATAACGAAGTATCGTTTCCCAGTAGTGCCGAGCGTCCATTTTCTTGCTTCTCTTCGTGTTCCAATTCGTGGTTCCGGAGGTACTCACGAATTAGCGCGGTATTCGCAACAGTTGCACATGGCGGCTGAGGAACATTTTGCAATATTAAACAATTCATATTACTCTTAAATTTGTATATATGTAGGTCTAGACGTAACATGCGTGAAGCGTGATACCGATTCTTTACATTGGCAACTAGATGGACATTGAACGCTAGAATTGCGAATAGTTTTATTTTTATAAAAATATTTAATAAGATTTAATTAAATTTTCAAAAAATTAAATAAAAATTTCAGCTTTATTTAAATAATTTTGATTTAAAATTTTGATATTCATTAATTATAATTTGTATTTTGCCTTTTAATTTTAATAGATAATTTTGAATATTTTAGAAGAAAAATAACTTTTGAAAACATATGAAAATATTTTAATTTTTACATTTACTTTAATTTACATTTTTGATGAAAATATATTCAAATTTTGTACACTTTGAATACAATTACATTTTATTTTTTAATCCTTTAGATCATTGAGAATGAGTACAAGTCGAGATCGTGATAGAAATAGAAAATATAAAAGTGGAGCTCAGAAAAGAAAAAAAGCTGAAAAGAAAAAAGAAATAGAAAATCTTCAAAGAGGCGGTCTGCTTAAATTTTTAAAAACTGGAAACAATGAAAGTGAGCAGACTTCTGTCGAGCATGACCCACATAAAATTCGCGAACAGGACATTACAAATTCTTTATTTAATGAAGATTTAATTACTGATCAAAACAATGAAAATGAGCAAGAAAATTATTCTCATCAAATCCACAACTCGAACAGGTCAGATGAAATCCCTGCAACTTCATATTCTTTACTAAATGAAGATTTAATTACTGATCAAAACAATGAGAATGAAAAAGAGAATTATTCATATCAAATTCACAACTCAGAAGCAACAAATGCAACTCTGGCCTGCCCATTAGAAGATGAAGAAAATTACATTCATGAAATCGGCAAATTGGACGAGAAAGACGAAACCTCCGGAGCTTTACTATGTTTATTGGATGATGATCCTGGAAAACGGCCGTCACGTCCTTCTGACAGCGTGAGAATGTTTCTAGCAAAACACAATCTGATTCAAATTAATGATTACGATTTTCCATTGGATGAACATGGCAGAAAATTTAGTATTTCATTTTACACCAAAATTCTTTCAAATGGAGAAAGAAACTGTAGAAANTGGCTTTTATATTCTAAGTTCAAAGACAAAGTATTTTGTTACTACTGTTACATGTTTCACAACCAATCTTCAAGATCAGCTTTGGCCAATGAAGGTATTTGTGACTGGAAACACTTAGGTTCTCGATTAAAAGAACACGAAACGTCACTTGCACACAAAAAAGCACACATGCAATTACTAGAACTGAAAAAAAGGCTGAATAAACAGCAAACAATCGATAGTATTCAACAAAGACAAGTAAACGCCGATATAGAACATTGGCGTGATGTTCTTAAAAGAATAATATTATGTGTCCAATATTTAGCCAAGCATAATGATGCTTTTCGTGGCACTAACAGCACAATATTTACAGAAAACAATGGAAAATTTCTAGGTTTAGTAGAAATGATTTCGAAATTTGATGCTAGAATGGCCGAACATGTAAGACGGATAAAAAATAATGAAACAAATGATCACTATCTAGGATGGAGAATTCAAAATGAGATTATTAATTTAATGGGTAATAAAGTGAGAGAAGAAATCATACATAANAATTTAAAAAGTAAATATTACTCAGTTCAACTAGATTGTANCAGGGACAAAAGTCACGTTGAACAACTAACATTTATTATACGTATTGTTGAACTACCAGAAGAAGAAAACAAGAAAGTCGAAATTAATGAGTATTTCATTGGTTTTACACCTGTTGTAAAAAGTACAGGTTTTGACTTAAGTGAAGAACTGAAAAAACAACTTTCAATTTTAGGCATTGATTTAAAAGATTGTCGAGGGCAAGCCTATGATAATGGCGCTAACATGGTTGGTAAAGAAAAAGGTGTACAAGCCAGAATTTTGGCCGAAAATCCAGAAGCATTCTTTGTGCCATGTACGGCGCATAGTTTGAATTTGTTACTAGGAGACGTGGCCTCAACTGTGCCAATAGCGATGACATTCTTTGGAACAATTCAAAGATTATATACGATATTTTCTGGATCTGCCCAAAGATGGAACATCTTGATGAAACACATATCAAATTTGACCTTACAACCACTCTCGGACACACGATGGGAATGCCGACTAAATGCTGTTAAAGCAATTAGATTTAATTTAGACAAGATACGAGATGCACTAGAAGAGTTAAGCGAAACAACAGAAGATCCTCAAATAAAGAGCGAATCGTGGTCTTTGGCGGAAAATGAAATTAATTTTGAATTTGCGCTATCCACAGTTATTTGGTATGAACTGTTGCTTGCTATTAATAATGTTAGCAAAAGCTTACAAAAAANCAACAGATCTAAGTTTGGCTATTTCACTTTTAAAAGGATTAAAAATATTTTTTNAAATTTTAGAGAAAATGGTTTTTCTAAATCGAAAGAAACTGCATGTGAAATATGCAACAAAAGTGACATTCCAATAAAATATAAGGAAATTAGAACAAGGAAACGAAAACGTTTGCATGACTATGAAGGAGAAGATTCACGTACAAATAATCCCGAAACTAATTTCTATAGAGACTATTTTCTGGCCATTATAGATCAAGGTATAGTCTCGATTGAAGAGAGATTTGAACAAATTGAGCAACATACTGCTATTTTCGGTTTTCTTTATAATATCCCAGCATTGAAAAATTTGAAAGAAGAAGAACTTAAGAAATACTGTATGGATCTAGATATTGCTTTAAGAGACGGTGAAAATCGCGATATAAGTGATAGCGATTTATATGATGAAATTAAAATATTTTGTAATATTTTCTGCGATAATGATAATTTATCATATGCGACCCCATTACAATGTTTGAACATGATATGTAAAATTCATGGTTCATTTCCGAATCTAAGTATTGCTTTAAGAATTTTATTGACAATTCCAGTTGCTACTGCCTCAGCAGAGCGAAGTTTCTCCAAATTGAAATTAATAAAAAACTATCTAAGAACTACAATGACTCAAGAAAGGTTGTCTAATTTGGCATTACTGTCAATAGAACACAAATTATGTGAAAATCTTGATTATAACAACATAATTAGTGATTTTGCTGAAATGAAGGCAAGAAAAATAAATTTTATGGAATAAATATATAATAATTTATGAATTATGTATGTCTTTATTTTATTACTCATCCAAACATCGCCGGCCCATCAACAGAACACCCAGACATGCGCAATAATAATTAAATTCAGTCGTCTTTGATATTTTGCCGACTTTCAGTCATATAAAAACCATAGCTTTACACATATTTTTCAATTTTGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod | TCX3 | 2879 | 2890 | - | 16.98 | AAATTCAAAATT |
| Zaphod | ERF2 | 553 | 565 | - | 16.86 | CCTCAGCCGCCAT |
| Zaphod | CG12605 | 2376 | 2384 | + | 16.69 | CACCTGTTG |
| Zaphod | ERF095 | 553 | 565 | + | 16.53 | ATGGCGGCTGAGG |
| Zaphod | TCX3 | 944 | 955 | + | 16.51 | ATATTCAAATTT |
| Zaphod | CDF5 | 1037 | 1057 | - | 16.47 | TCCACTTTTATATTTTCTATT |
| Zaphod | ERF091 | 553 | 565 | + | 16.38 | ATGGCGGCTGAGG |
| Zaphod | TCX6 | 790 | 804 | + | 16.36 | ATTTAAAATTTTGAT |
| Zaphod | INO4 | 3056 | 3064 | + | 16.24 | GCATGTGAA |
| Zaphod | INO2 | 3056 | 3064 | + | 16.20 | GCATGTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
