Zaphod
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001123 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 4079 |
| Kimura value | 23.61 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Zaphod subfamily |
| Comment | ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCATATCACAAACACACAAAAAATAAATTTATTAAAGAACACATGGGCGCCTCTGTCACTCGGGATCCGGCGCTCAGCGCTGGCACAGCGCGACCCGTAACCCTAAACATCCGCTCTCGTGACTAACACCGTTCAGGCCCCAGGGAAACGCTTCTCCACATCTCTTGCCCTATGTCCTCGAAACAAAAGGCGACTGCGTCCGAATGCCGTGAAGGTTTGTGGGTTGTGCCGCTGCCGACGTCGGAGACGGACACTGCTTCGGAGTGCGGGGAGGATTTGAGCGGCGGAAGCGCTTAGGTAAGAGAAAAGACAAATTAATTAACTTGTCAAATCCTTCCTCTCAGATAGCATGAATGCAATAGATTCTTGCATAACGAAGTATCGTTTCCCAGTAGTGCCGAGCGTCCATTTTCTTGCTTCTCTTCGTGTTCCAATTCGTGGTTCCGGAGGTACTCACGAATTAGCGCGGTATTCGCAACAGTTGCACATGGCGGCTGAGGAACATTTTGCAATATTAAACAATTCATATTACTCTTAAATTTGTATATATGTAGGTCTAGACGTAACATGCGTGAAGCGTGATACCGATTCTTTACATTGGCAACTAGATGGACATTGAACGCTAGAATTGCGAATAGTTTTATTTTTATAAAAATATTTAATAAGATTTAATTAAATTTTCAAAAAATTAAATAAAAATTTCAGCTTTATTTAAATAATTTTGATTTAAAATTTTGATATTCATTAATTATAATTTGTATTTTGCCTTTTAATTTTAATAGATAATTTTGAATATTTTAGAAGAAAAATAACTTTTGAAAACATATGAAAATATTTTAATTTTTACATTTACTTTAATTTACATTTTTGATGAAAATATATTCAAATTTTGTACACTTTGAATACAATTACATTTTATTTTTTAATCCTTTAGATCATTGAGAATGAGTACAAGTCGAGATCGTGATAGAAATAGAAAATATAAAAGTGGAGCTCAGAAAAGAAAAAAAGCTGAAAAGAAAAAAGAAATAGAAAATCTTCAAAGAGGCGGTCTGCTTAAATTTTTAAAAACTGGAAACAATGAAAGTGAGCAGACTTCTGTCGAGCATGACCCACATAAAATTCGCGAACAGGACATTACAAATTCTTTATTTAATGAAGATTTAATTACTGATCAAAACAATGAAAATGAGCAAGAAAATTATTCTCATCAAATCCACAACTCGAACAGGTCAGATGAAATCCCTGCAACTTCATATTCTTTACTAAATGAAGATTTAATTACTGATCAAAACAATGAGAATGAAAAAGAGAATTATTCATATCAAATTCACAACTCAGAAGCAACAAATGCAACTCTGGCCTGCCCATTAGAAGATGAAGAAAATTACATTCATGAAATCGGCAAATTGGACGAGAAAGACGAAACCTCCGGAGCTTTACTATGTTTATTGGATGATGATCCTGGAAAACGGCCGTCACGTCCTTCTGACAGCGTGAGAATGTTTCTAGCAAAACACAATCTGATTCAAATTAATGATTACGATTTTCCATTGGATGAACATGGCAGAAAATTTAGTATTTCATTTTACACCAAAATTCTTTCAAATGGAGAAAGAAACTGTAGAAANTGGCTTTTATATTCTAAGTTCAAAGACAAAGTATTTTGTTACTACTGTTACATGTTTCACAACCAATCTTCAAGATCAGCTTTGGCCAATGAAGGTATTTGTGACTGGAAACACTTAGGTTCTCGATTAAAAGAACACGAAACGTCACTTGCACACAAAAAAGCACACATGCAATTACTAGAACTGAAAAAAAGGCTGAATAAACAGCAAACAATCGATAGTATTCAACAAAGACAAGTAAACGCCGATATAGAACATTGGCGTGATGTTCTTAAAAGAATAATATTATGTGTCCAATATTTAGCCAAGCATAATGATGCTTTTCGTGGCACTAACAGCACAATATTTACAGAAAACAATGGAAAATTTCTAGGTTTAGTAGAAATGATTTCGAAATTTGATGCTAGAATGGCCGAACATGTAAGACGGATAAAAAATAATGAAACAAATGATCACTATCTAGGATGGAGAATTCAAAATGAGATTATTAATTTAATGGGTAATAAAGTGAGAGAAGAAATCATACATAANAATTTAAAAAGTAAATATTACTCAGTTCAACTAGATTGTANCAGGGACAAAAGTCACGTTGAACAACTAACATTTATTATACGTATTGTTGAACTACCAGAAGAAGAAAACAAGAAAGTCGAAATTAATGAGTATTTCATTGGTTTTACACCTGTTGTAAAAAGTACAGGTTTTGACTTAAGTGAAGAACTGAAAAAACAACTTTCAATTTTAGGCATTGATTTAAAAGATTGTCGAGGGCAAGCCTATGATAATGGCGCTAACATGGTTGGTAAAGAAAAAGGTGTACAAGCCAGAATTTTGGCCGAAAATCCAGAAGCATTCTTTGTGCCATGTACGGCGCATAGTTTGAATTTGTTACTAGGAGACGTGGCCTCAACTGTGCCAATAGCGATGACATTCTTTGGAACAATTCAAAGATTATATACGATATTTTCTGGATCTGCCCAAAGATGGAACATCTTGATGAAACACATATCAAATTTGACCTTACAACCACTCTCGGACACACGATGGGAATGCCGACTAAATGCTGTTAAAGCAATTAGATTTAATTTAGACAAGATACGAGATGCACTAGAAGAGTTAAGCGAAACAACAGAAGATCCTCAAATAAAGAGCGAATCGTGGTCTTTGGCGGAAAATGAAATTAATTTTGAATTTGCGCTATCCACAGTTATTTGGTATGAACTGTTGCTTGCTATTAATAATGTTAGCAAAAGCTTACAAAAAANCAACAGATCTAAGTTTGGCTATTTCACTTTTAAAAGGATTAAAAATATTTTTTNAAATTTTAGAGAAAATGGTTTTTCTAAATCGAAAGAAACTGCATGTGAAATATGCAACAAAAGTGACATTCCAATAAAATATAAGGAAATTAGAACAAGGAAACGAAAACGTTTGCATGACTATGAAGGAGAAGATTCACGTACAAATAATCCCGAAACTAATTTCTATAGAGACTATTTTCTGGCCATTATAGATCAAGGTATAGTCTCGATTGAAGAGAGATTTGAACAAATTGAGCAACATACTGCTATTTTCGGTTTTCTTTATAATATCCCAGCATTGAAAAATTTGAAAGAAGAAGAACTTAAGAAATACTGTATGGATCTAGATATTGCTTTAAGAGACGGTGAAAATCGCGATATAAGTGATAGCGATTTATATGATGAAATTAAAATATTTTGTAATATTTTCTGCGATAATGATAATTTATCATATGCGACCCCATTACAATGTTTGAACATGATATGTAAAATTCATGGTTCATTTCCGAATCTAAGTATTGCTTTAAGAATTTTATTGACAATTCCAGTTGCTACTGCCTCAGCAGAGCGAAGTTTCTCCAAATTGAAATTAATAAAAAACTATCTAAGAACTACAATGACTCAAGAAAGGTTGTCTAATTTGGCATTACTGTCAATAGAACACAAATTATGTGAAAATCTTGATTATAACAACATAATTAGTGATTTTGCTGAAATGAAGGCAAGAAAAATAAATTTTATGGAATAAATATATAATAATTTATGAATTATGTATGTCTTTATTTTATTACTCATCCAAACATCGCCGGCCCATCAACAGAACACCCAGACATGCGCAATAATAATTAAATTCAGTCGTCTTTGATATTTTGCCGACTTTCAGTCATATAAAAACCATAGCTTTACACATATTTTTCAATTTTGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Zaphod | BPC5 | 1070 | 1099 | + | -45.35 | AAAAAAGCTGAAAAGAAAAAAGAAATAGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
